Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0007700

Sequence Length

679 nt

GC Content

0.5184

CAUUGAUCUGGUAGCCUUGCUCCAGAAGCCUGUUCCUCACAGUCAAGCCUCAGAAGCCAACUCCUUUGAAACUUCCCAACAGCAGGGCUUUGGCCAAGCCCUUGUCUUCACAAAUUCGCAACACAACAAUCAGAUGGCACCAGGGACUGGCAGCUCCACUGCCGUCAACUCCUGUUCUCCUCAGAGCCUGUCAUCCGUCCUUGGCUCAGGAUUUGGAGAGCUUGCACCACCAAAAAUGGCAAACAUCACCAGCUCCCAGAUUUUGGACCAGUUGAAAGCUCCGAGUUUGGGCCAGUUUACCACCACCCCAAGUACACAGCAGAAUAGUACAAGUCACCCUACAACUACUACUUCUUGGGACCUCAAGCCCCCAACAUCCCAGUCCUCAGUCCUCAGUCAUCUUGACUUCAAAUCUCAACCUGAGCCAUCCCCAGUUCUUAGCCAGUUGAGCCAGCGACAACAGCACCAGAGCCAGGCAGUCACUGUUCCUCCUCCUGGUUUGGAGUCCUUUCCUUCCCAGGCAAAACUUCGAGAAUCAACACCUGGAGACAGUCCCUCCACUGUGAACAAGCUUUUGCAGCUUCCCAGCACGACCAUUGAAAAUAUCUCUGUGUCUGUCCACCAGCCACAGCCCAAACACAUCAAACUUGCUAAGCGGCGGAUACCCCCAGCUUCUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-162.30 kcal/mol

Ensemble Metrics

Free Energy: -176.47

Frequency: 0.0000

Diversity: 209.06

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((.((((.((...(((.(((((((.((((((((..(((...((((..((((...(((((.(((........)))..(((((((((.....)))))).)))..........((((.............(((((...(((((((.(((((.....))))))))..(((.((.......)))))))))....)))))..(((((((((((((((.(((((((.....(((....))).......))..)))))))))))...((((....(((..(((..((..(((((...((((........((((((.........((.(((((...((......))...))))).)))))))).....)))).)))))..))..)))..)))))))..(((((...)))))...........)))))))))......((((..........))))..))))...........((((((((.((............)))))))))))))))......))))..))))...)))..))).....(((..(((((.......))))).)))))))).))))))).)))......))...))))............(((((.(((.....))).))))).........)))))...))((((((((.((....)))).))))...))

Thermodynamic Ensemble Prediction

(((((((,(((,.({...(((.(((((((.((({,.(((((((...({{(..((((...{{{,{,|||,..,,........{{{((((((.....})))))||||,...........,.............,((((((..,{((((({(((((.....))))}}||{{{....|||,..,,,,|||||,}||,.,.,.,..{|||{((((((((((.(((((((.....{{,....}))...........)))))))))))}}}||{|,}},|||..|||,.||}{(((((...((.....,,...))}}}|.....,},{(({(((((...({......}}...))))).))))|(((.......,..}}}},..,},,}}}..,.})}},..{||||,,.}))}}......,{{{{||||,||}}......|,,|,,.},,}}}})}}...||||,....}}.|||{{|||{((|((...}}},..,,.}}}}))))}}||||}...,.,)}}}..)))}...}}}..}}}..........{((((.......)))))))))))))).))))))).)))....,,)}...},,,..,.........(((((.(((.....))).))))).........)))))...))(({(({((,((....}})).)))},,.))