Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0008000

Sequence Length

470 nt

GC Content

0.5106

GAUUUGGAGAGCUUGCACCACCAAAAAUGGCAAACAUCACCAGCUCCCAGAUUUUGGACCAGUUGAAAGCUCCGAGUUUGGGCCAGUUUACCACCACCCCAAGUACACAGCAGAAUAGUACAAGUCACCCUACAACUACUACUUCUUGGGACCUCAAGCCCCCAACAUCCCAGUCCUCAGUCCUCAGUCAUCUUGACUUCAAAUCUCAACCUGAGCCAUCCCCAGUUCUUAGCCAGUUGAGCCAGCGACAACAGCACCAGAGCCAGGCAGUCACUGUUCCUCCUCCUGGUUUGGAGUCCUUUCCUUCCCAGGCAAAACUUCGAGAAUCAACACCUGGAGACAGUCCCUCCACUGUGAACAAGCUUUUGCAGCUUCCCAGCACGACCAUUGAAAAUAUCUCUGUGUCUGUCCACCAGCCACAGCCCAAACACAUCAAACUUGCUAAGCGGCGGAUACCCCCAGCUUCUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-96.50 kcal/mol

Ensemble Metrics

Free Energy: -107.56

Frequency: 0.0000

Diversity: 140.86

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((.(((((((.....(((....))).......))..))))))))))))(((((..(((((...(((.....((((((...((.....))...)))))).....)))(((((((((...((......))...))))).))))(((((................)))))...(((((.....(((((...)))))............)))))..((((((....((((((.(((((((.(((.(((..(.((......))...)..))).)))...)))..(((((...((((....))))...)))))......(((((...((..(((.(((((.......)))))..))).....((....)).(((....)))..))...))))).......(((((.(((.....))).))))).............)))).)))))).)).)))).....)))))))))).

Thermodynamic Ensemble Prediction

(((((((.(((((((.....{{,....}))...........)))))))))))}(((((..{((((...{{{,,|,{((((((,..({.....,,...}}}}}|,.,.,||,(((((((((...((......}}...))))).))))((((,.........,,,,...,,,,,,...,,,{.....(((({...}))))......(((({,{||||,.,,,,,,.,..|{||||,|||||||..,({,,{....||,,,,{{(,.,((,{{...))),,.,,.}}|||||}||((((,..,|}||,..,,))).,..,}}},}},......,,,.{((((.......)))))}}))}....,((|...}},|||,...}}}..,....,||,........{((((.(((.....))).))))),,,,,,,....,.,,}|,|}}||||||.||},..,,,)})))))))))