Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0008700

Sequence Length

404 nt

GC Content

0.5173

CAUUGAUCUGGUAGCCUUGCUCCAGAAGCCUGUUCCUCACAGUCAAGCCUCAGAAGCCAACUCCUUUGAAACUUCCCAACAGCAGGGCUUUGGCCAAGCCCUUGUCUUCACAAAUUCGCAACACAACAAUCAGAUGGCACCAGGGACUGGCAGCUCCACUGCCGUCAACUCCUGUUCUCCUCAGAGCCUGUCAUCCGUCCUUGGCUCAGGAUUUGGAGAGCUUGCACCACCAAAAAUGGCAAACAUCACCAGCUCCCAGAUUUUGGACCAGUUGAAAGCUCCGAGUUUGGGCCAGUUUACCACCACCCCAAGUACACAGCAGAAUAGUACAAGUCACCCUACAACUACUACUUCUUGGGACCUCAAGCCCCCAACAUCCCAGUCCUCAGUCCUCAGUCAUCUUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-90.40 kcal/mol

Ensemble Metrics

Free Energy: -100.61

Frequency: 0.0000

Diversity: 99.76

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((.(((((.(((...))))))))...((((.....))))..(((..(((((..........)))))..))).......(((((((((.....)))))).))).....................))))((((((((....(((((((((((.....))))).((((((...((((......(((((..............)))))(((((((((.(((((((.....(((....))).......))..)))))))))))))))))).))))))..(((.....((((((...((.....))...)))))).....)))(((((((((...((......))...))))).))))(((((................)))))......))))))..)))))).))

Thermodynamic Ensemble Prediction

.((((.(((((.(((...)))))))).{.((((.....)))).,,{{..{{{(({(........})))}..)}}......,|{(((((((.....))))))}|||.....................))))((((((((.,..(((((((((((.....))))}.,{(((,...|||,.,{,,.(((({..,{,........|||}||(((((((((.(((((((.....{{,....}))...........)))))))))))))))),),))})))..|||,.}}}|(((((...({.....}}...)))))|.....,},{((((((((...((......}}...))))).)))){(((..........}}}}...,,},}}},,,.}))}}}..))))))},)