Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0008800

Sequence Length

472 nt

GC Content

0.5106

CUUUCUGAAACAAAGGUCUUCACUGCCUCAUCUGCUCCAGCAGAGAAUCACAUCUUACCUGGGCAAAGCAUUGAUCUGGUAGCCUUGCUCCAGAAGCCUGUUCCUCACAGUCAAGCCUCAGAAGCCAACUCCUUUGAAACUUCCCAACAGCAGGGCUUUGGCCAAGCCCUUGUCUUCACAAAUUCGCAACACAACAAUCAGAUGGCACCAGGGACUGGCAGCUCCACUGCCGUCAACUCCUGUUCUCCUCAGAGCCUGUCAUCCGUCCUUGGCUCAGGAUUUGGAGAGCUUGCACCACCAAAAAUGGCAAACAUCACCAGCUCCCAGAUUUUGGACCAGUUGAAAGCUCCGAGUUUGGGCCAGUUUACCACCACCCCAAGUACACAGCAGAAUAGUACAAGUCACCCUACAACUACUACUUCUUGGGACCUCAAGCCCCCAACAUCCCAGUCCUCAGUCCUCAGUCAUCUUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-110.20 kcal/mol

Ensemble Metrics

Free Energy: -120.39

Frequency: 0.0000

Diversity: 128.13

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.((((((((.(((..(((.(((......(((.((((..((((......))))..)))))))..))).)))(((((.(((...))))))))...((((.....))))....(((...((((((..((.(((((........))).)).)))))))))))...))).)))).)))).)))...)((...........(((((((....(((((((((((.....))))).((((((...((((......(((((..............)))))(((((((((.(((((((.....(((....))).......))..)))))))))))))))))).))))))..(((.....((((((...((.....))...)))))).....)))(((((((((...((......))...))))).))))(((((................)))))......))))))..)))))))))

Thermodynamic Ensemble Prediction

(((({(((..,..,((.{{(,(,(({......(((.((((..((((......))))..))))))).,|||.}},(((((.(((...)))))))).,.{{{|.....}))),.,}|}|}}}||||({.......{{{........,,,.,|,{((((({.....}))))))})}.,,,,.,,....},,...........(((((((.,..(((((((((((.....))))}.,{(((,...|||,.,{,,.((({{..,{,........|||}||(((((((((.(((((((.....{{,....}))...........)))))))))))))))),},))})))..|||,.}}}|(((((...({.....}}...)))))|.....,},{((((((((...((......}}...))))).)))){(((..........}}}}...,,},}}},,,.}))}}}..)))))))})