Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0009400

Sequence Length

358 nt

GC Content

0.4553

UCAUAGGCUUUCAUUCUCUUUGGAUCUCGACCUGACAGGACAGAUGGGGCAGGAGUAACAUUGUUUUUCCUGUACUUAUUUAUGGAACGUAUUUGGUGUUCUUAGUCAUCUAAACAACUUGAAAUGAAAAUAGCAGUGUCUAUGUCAUCCGUCCUUGGCUCAGGAUUUGGAGAGCUUGCACCACCAAAAAUGGCAAACAUCACCAGCUCCCAGAUUUUGGACCAGUUGAAAGCUCCGAGUUUGGGCCAGUUUACCACCACCCCAAGUACACAGCAGAAUAGUACAAGUCACCCUACAACUACUACUUCUUGGGACCUCAAGCCCCCAACAUCCCAGUCCUCAGUCCUCAGUCAUCUUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-73.80 kcal/mol

Ensemble Metrics

Free Energy: -82.56

Frequency: 0.0000

Diversity: 131.15

Structure Visualization

Structure Prediction

MFE Structure Prediction

((...((..((((.......)))).)).))(.(((((((((.(((((((((((((.(((...))).)))))))........((((((((((.(((.((((.(((.(((...........)))..))).)))).)))....)))))..)))))..((((.(((((((((((.(((((((.....(((....))).......))..)))))))))))))))).))))......(((.....((((((...((.....))...)))))).....)))(((((((((...((......))...))))).))))((((..........))))....))))....)).)))))..))))....)

Thermodynamic Ensemble Prediction

((,.,((..,,,(,{{....,)))}...},}}}})(((((,.({(((((((((((,({{..,||}.}}}}|||{{,,{{{,.((,,,,((({((({{((,.{(({,,,.}}}}......,|,.{{||..{{{{,,....}))),)}}),,,,..{((({(((((((((((.(((((({,....{{{....|})...........}}}}})))}})))))).}})),,}..,|||}}}}}}|||||},,|,..........,))))))})....)|||||||||,..{,......}}.,.}}})),)))}{(((..........}}}}...,}}}},,,,,..))))),,}}}.}))))