Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0009700

Sequence Length

436 nt

GC Content

0.4679

ACUUCAUGGGAGACUGUAGGGUGUAAGAAAAAGAAUUUUGCAAAAGAAAAUUCAGAAAACAAAGAGAAUAGAGAGAAGAAAAGCGAGAAAGAAUCGAGUCGUGGACGUGGAAACAACAACCGGAAAGGAAGAGGCGGCAAUCGUGGCAGAGAAUCUUUCUGAAACAAAGGUCUUCACUGCCUCAUCUGCUCCAGCAGAGAAUCACAUCUUACCUGGGCAAAGUCAUCCGUCCUUGGCUCAGGAUUUGGAGAGCUUGCACCACCAAAAAUGGCAAACAUCACCAGCUCCCAGAUUUUGGACCAGUUGAAAGCUCCGAGUUUGGGCCAGUUUACCACCACCCCAAGUACACAGCAGAAUAGUACAAGUCACCCUACAACUACUACUUCUUGGGACCUCAAGCCCCCAACAUCCCAGUCCUCAGUCCUCAGUCAUCUUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-100.90 kcal/mol

Ensemble Metrics

Free Energy: -109.76

Frequency: 0.0000

Diversity: 118.36

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((...((((.(((((..((((((........(((((((.......)))))))...................((((((.....(((.......)))(((.((((((.((((.....((((.((....((.(((((((..(((((..((((((...))))))..))...))).....))))))).))(((.((((..((((......))))..))))))).(((((........)))))((((((((((.(((((((.....(((....))).......))..)))))))))))))))..)).)))).....)))).))(((((...((.....))...)))))((((...........))))........)))).)))....))))))(((........)))...)))))))))))))))......)))((...))

Thermodynamic Ensemble Prediction

(((...((((.(((((..((((((........(((((((.......)))))))........................,.....(((.......))},{||{{(({{((((,,{{.....{{{{,..|{{.(((((((..,{,((..((((((...})))))..))...})}.....))))))).,,(((.((((..((((......))))..))))))}......}})}))).|||||((((((((((.(((((((,....{{{....}})...........}}}}})))}})))))}.,},},,,...||}}}},}}|||||,.,||,,.,,})...}}}},{{,{...,.,,,.{{|||,..{,....,,}}...)}}}}.))))|(((..........))},)))))))))))))))......)))({...})