Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0012400

Sequence Length

574 nt

GC Content

0.4547

ACUUCAUGGGAGACUGUAGGGUGUAAGAAAAAGAAUUUUGCAAAAGAAAAUUCAGAAAACAAAGAGAAUAGAGAGAAGAAAAGCGAGAAAGAAUCGAGUCGUGGACGUGGAAACAACAACCGGAAAGGAAGAGGCGGCAAUCGUGGCAGAGAAUAGGUGAAGAAAAUGGAAUUGAUUGCAAUCAAGUGGACAAACCUUCAGAUCGUGGCAAGCGAGCCCGGGGUAGAGGAUUUGGACGUGGCAGAGGGAGAGGGGCAGGAAGGUUCUCAACCCAAGGCAUGGGGACAUUUAAUCCUGCAGACUAUUCAGAUUCUACAUCUACAGAUGUGUGUGGGACAAAGCUAGUAGUUUGGGAAGCUGCUCAGAAUGGUGCAGAUGAGGGAACUGAACUGGCAUCAAAUACUCACAACAUAGCUCAGGAUCUGUCAAACAAAAGUUCUUAUGGACUCAAAGGGGCUUGGAAGAAUUCUGUGGAAGAGUGGACAACAGAAGACUGGACUGAAGAUCUUUCUGAAACAAAGGUCUUCACUGCCUCAUCUGCUCCAGCAGAGAAUCACAUCUUACCUGGGCAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-135.20 kcal/mol

Ensemble Metrics

Free Energy: -146.91

Frequency: 0.0000

Diversity: 175.98

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.((((....)))).)))).(........(((((((.......)))))))..............................(((.......))).(((...)))((....)).....((.....)).....((.((....)).))..........(((((....((...(((((....))))).....))...)))))..((((.....))))(((((((..(((((((((.....(((....((.((((((((((............((((.....))))((((....((((((.((.((((........((((((....))))))((((((.....(((((((((((......((((.(......).))))......)))))..))))))........))))))..)))))))))))).))))......((((((((.((....)).))))))))...((..((((((.............))))))..))....(((((((((((.......)))))))))))))))))).))).))))).....))))).).)))..)))))))..).

Thermodynamic Ensemble Prediction

{(((.((((....||}}.}}}}.{........(((((((.......)))))))..............................(((.......))}..||.{{{..(({....}.,}..}},....,|,.{{{(({({..,,|{,{({,,...,{{{({.{{,,..{{,,.{{{{{,,|.,}}},.,{..{{,{||||},..(((,{{{..,,,.||||||{..,||||,|||}..},{{{,.,.{{,,{(({{(((({{.,{{{{{{{.|(...,)..))))}})......}))))),,.||,|}},..}}||,||||}}.,|,|(({((((((.....{((((((((((....,,|||||,|,..|||,||||.,.,,.}}})).,,))))),},,....)))))},)))},}}},,,,)}))}},.....((((((((.((....)).)))))))),..{{..((((((|..........,.})))))..))....(((((((((((.......)))))))))))))))))).))}{|,|||{..{{||,,,.,.)))}.}))))))..,.