Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0014000

Sequence Length

510 nt

GC Content

0.4510

ACUUCAUGGGAGACUGUAGGGUGUAAGAAAAAGAAUUUUGCAAAAGAAAAUUCAGAAAACAAAGAGAAUAGAGAGAAGAAAAGCGAGAAAGAAUCGAGUCGUGGACGUGGAAACAACAACCGGAAAGGAAGAGGCGGCAAUCGUGGCAGAGAAUUUAGAGGUGAAGAAAAUGGAAUUGAUUGCAAUCAAGUGGACAAACCUUCAGAUCGUGGCAAGCGAGCCCGGGGUAGAGGAUUUGGACGUGGCAGAGGGAGAGGGGCAGGAAGGUUCUCAACCCAAGGCAUGGGGACAUUUAAUCCUGCAGACUAUUCAGAUUCUACAUCUACAGAUGUGUGUGGGACAAAGCUAGUAGUUUGGGAAGCUGCUCAGAAUGGUGCAGAUGAGGGAACUGAACUGGCAUCAAAUACUCACAACAUAGCUCAGGAUCUGUCAAACAAAAGUUCUUAUGGACUCAAAGGGGCUUGGAAGAAUUCUGUGGAAGAGUGGACAACAGAAGACUGGACUGAAGAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-107.40 kcal/mol

Ensemble Metrics

Free Energy: -118.76

Frequency: 0.0000

Diversity: 153.18

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.((((....)))).))))((........(((((((.......)))))))..............................(((.......)))(((((((((.((((((.(.....((.....))..((....(((((((...((.....((((....)))).....))....)))))))..))....(..((((((((....(((.(((......))))))....)))).))))..).........(((.((..((((((..(((((((.((...))..)))))))......))))))...)).))).).)))))).)))))((.((((((((((.....(((((((((((......((((.(......).))))......)))))..))))))........))))).))))).))(((..(((((.......((((((((.((....)).))))))))......(((((.....))))).....)))))...)))))))....))

Thermodynamic Ensemble Prediction

.((((({{{,,,.(((({{{{(((,.,,....(((((((.......)))))))..............................(((.......))}.,|{,{{{,.(({....}..}..||.....}}.....,..(((((((...((.....((((....)))).....))....)))))))..}}...,(..(((({(((,...(((.(((......)))))}..,.)))).))))..),|,,{....,{,,{{,,{({{{{,}{|||||{.||,..,),.}}}}}}).,....)))))),,.)).)))...}}||||,||}}}||,((((((((((.....{((((((((((....,,|||||,|...|||,||||.,.,,.}}})).,,))))),},,....)))))}})))}.,|{{{..{||{{|......{(((((((.((....)).})))))))...,,..{{((|||.....,,.....}}))},..))},.,)))}),.