Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0014800

Sequence Length

426 nt

GC Content

0.4437

CCGUUCUCUCUGAUAGACUUCAUGGGAGACUGUAGGGUGUAAGAAAAAGAAUUUUGCAAAAGAAAAUUCAGAAAACAAAGAGAAUAGAGAGAAGAAAAGCGAGAAAGAAUCGAGUCGUGGACGUGGAAACAACAACCGGAAAGGAAGAGGCGGCAAUCGUGGCAGAGAAUAGGUGAAGAAAAUGGAAUUGAUUGCAAUCAAGUGGACAAACCUUCAGAUCGUGGCAAGCGAGCCCGGGGUAGAGAUGUGUGUGGGACAAAGCUAGUAGUUUGGGAAGCUGCUCAGAAUGGUGCAGAUGAGGGAACUGAACUGGCAUCAAAUACUCACAACAUAGCUCAGGAUCUGUCAAACAAAAGUUCUUAUGGACUCAAAGGGGCUUGGAAGAAUUCUGUGGAAGAGUGGACAACAGAAGACUGGACUGAAGAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-87.00 kcal/mol

Ensemble Metrics

Free Energy: -96.15

Frequency: 0.0000

Diversity: 84.19

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(((((((((.((.((((.((((....)))).)))).)).......(((((((.......)))))))...............)))))))))......(((.......))).(((...)))((....)).....((.....)).....((.((....)).))..........(((((....((...(((((....))))).....))...)))))..(((.(((......))))))....(((.((((((((((.....(((((((((((......((((.(......).))))......)))))..))))))........))))).))))).))).))(((((((......((((((((.((....)).))))))))...((..((((((.............))))))..)).)))...))))

Thermodynamic Ensemble Prediction

((.(((((((((.((.((((.((((....)))).)))).)}.......(((((((.......)))))))...............}))))))))......(((.......))}.,|{.,,|.,{({....}.,}..||,....,,.....((.((....)).}}..........{{{{{....{,...((({{..,.}))}}.....,..,,))))}..{((,(((......))))),,,,.(((.((((((((((.....{((((((((((....,,|||||,|,..|||,||||.,.,,.}}})).,,))))),},,....)))))}})))).))).))((((,((,.....((((((((.((....)).))))))))...((..((((((,..........}.))))))..)).,,}}}}))))