Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0016100

Sequence Length

502 nt

GC Content

0.4462

CUUAUGGAAGUGACAGGGAAAAAUCAGGAUGAAUGCAUAGUGGCCCUACAUGAUUGUAAUGGAGAUGUGAACAAAGCUAUCAAUAUAUUGCUGGAAGGGAAUUCAGACACAACUUCAUGGGAGACUGUAGGGUGUAAGAAAAAGAAUUUUGCAAAAGAAAAUUCAGAAAACAAAGAGAAUAGAGAGAAGAAAAGCGAGAAAGAAUCGAGUCGUGGACGUGGAAACAACAACCGGAAAGGAAGAGGCGGCAAUCGUGGCAGAGAAUUUAGAGGUGAAGAAAAUGGAAUUGAUUGCAAUCAAGUGGACAAACCUUCAGAUCGUGGCAAGCGAGCCCGGGGUAGAGGAUUUGGACGUGGCAGAGGGAGAGGGGCAGGAAGGUUCUCAACCCAAGGCAUGGGGACAUUUAAUCCUGCAGACUAUUCAGAUUCUACAUCUACAGAUGUGUGUGGGACAAAGCUAGUAGUUUGGGAAGCUGCUCAGAAUGGUGCAGAUGAGGGAACUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-101.40 kcal/mol

Ensemble Metrics

Free Energy: -112.40

Frequency: 0.0000

Diversity: 129.59

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.......((..((.(.(.....((..(((....)))..))((((((((...((.((.(((((.((((.....(((............))).(((.....)))...)))).))))))).))...))))))))..........(((((((.......)))))))..............................(((.......))).((((((((.((((((.(.....((.....))..((....(((((((...((.....((((....)))).....))....)))))))..))....(..((((((((....(((.(((......))))))....)))).))))..).........(((.((..((((((..(((((((.((...))..)))))))......))))))...)).))).).)))))).))))).))).).).))..))......))((((((......((((.(......).))))......))))))

Thermodynamic Ensemble Prediction

((,,{,....{,,{,,,.......((,,(((,,,,|}}..|,((((((((...((.{.((((((.((((.....,{{..........,,)||{((......)))},.)))).)))))),.})...))))))))..........(((((((.......)))))))..............................(((.......))).,||{{({{.(((,,..}..,..{{.....}}.....,..(((((((...((.....((((....)))).....))....)))))))..}}...,(..((((((((....(((.(((......))))))..,.)))).))))..)},,.,...,{{,,{(,,{({{{{.}{|||||{.||,..,),.))}})}),}},..)))))}...)}.})).,.}})}||,|||||.,.,,},)})}},,,....,,))((((((......(((({(,...,,).))))......))))))