Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0017700

Sequence Length

429 nt

GC Content

0.4219

UGAGCAGUGACCAUUGUCGAGGUGCUCGGGAAAAACCACAGAUUUCAGCAGCACAAUCAACGCAACCACAGAAACAAGUGGUACAGGCAACAGCUGAACAGAUGCGUCUCGCUCAAGUGAUCUUUGAUAAGAAUGAUUCAGAUUUUGAAGCUAAAGUUAAGCAGCUUAUGGAAGUGACAGGGAAAAAUCAGGAUGAAUGCAUAGUGGCCCUACAUGAUUGUAAUGGAGAUGUGAACAAAGCUAUCAAUAUAUUGCUGGAAGGGAAUUCAGACACAACUUCAUGGGAGACUGUAGGGUGUAAGAAAAAGAAUUUUGCAAAAGAAAAUUCAGAAAACAAAGAGAAUAGAGAGAAGAAAAGCGAGAAAGAAUCGAGUCGUGGACGUGGAAACAACAACCGGAAAGGAAGAGGCGGCAAUCGUGGCAGAGAAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-80.60 kcal/mol

Ensemble Metrics

Free Energy: -90.17

Frequency: 0.0000

Diversity: 92.70

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((.((((....))))...))))))(......((((.(((((((((.((.........)).(((((........)))))..........)))))...(((...(((((((...((.(.((((.(((((..((.....(((((((....)))))))...)).))))).))))).))..........((..(((....)))..))((((((((...((.((.(((((.((((.....(((............))).(((.....)))...)))).))))))).))...))))))))..........(((((((.......)))))))............................)))))))....)))..(((((((..((.......))..))............))))))))))))).......)

Thermodynamic Ensemble Prediction

((((((.((((....))),...))))))(......((((.((((.,.((.{(........,||.(((((........))))).,,{,{....)))},...{{|,|,(((((((...,(..(((((,,,,,,..({,{((,{{(((({,.,{{.,,|||...}},}}},},}}}}),}}..,......}||..|||,.,.)))..,,((((((((...((.{.((((((.((((.....,,{...........,)||{((......))),,.)))).)))))),.})...))))))))..........(((((((.......)))))))...............,,}}}}.......)))))))....,}|..,|{.{{|..{({....}.,}..||,....,}..,..)).)})))))))).......)