Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0018700

Sequence Length

343 nt

GC Content

0.4227

CUUAUGGAAGUGACAGGGAAAAAUCAGGAUGAAUGCAUAGUGGCCCUACAUGAUUGUAAUGGAGAUGUGAACAAAGCUAUCAAUAUAUUGCUGGAAGGGAAUUCAGACACAACUUCAUGGGAGACUGUAGGGUGUAAGAAAAAGAAUUUUGCAAAAGAAAAUUCAGAAAACAAAGAGAAUAGAGAGAAGAAAAGCGAGAAAGAAUCGAGUCGUGGACGUGGAAACAACAACCGGAAAGGAAGAGGCGGCAAUCGUGGCAGAGAAUUUAGAGGUGAAGAAAAUGGAAUUGAUUGCAAUCAAGUGGACAAACCUUCAGAUCGUGGCAAGCGAGCCCGGGGUAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-51.50 kcal/mol

Ensemble Metrics

Free Energy: -59.45

Frequency: 0.0000

Diversity: 82.15

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((...((..(((.(((.......((..(((....)))..))((((((((...((.((.(((((.((((.....(((............))).(((.....)))...)))).))))))).))...))))))))..........(((((((.......)))))))..............................(((.......))).(((...)))((....)).....((.....))..((....(((((((...((.....((((....)))).....))....)))))))..))...........))))))..)).....)))(..(((...)))...)

Thermodynamic Ensemble Prediction

(((.,..|.,(,,,,{{......,((..{((....}}}..}}((((((((...((.{.((((((.((((.....,,{...........,)||{((......))),,.)))).)))))),.})...))))))))..........(((((((.,.....)))))))..............................(((.......))}.,||.,,|.,{({....}.,}..||.....,,.....{{.((,,{{||.||,.....(((,..,,|}}}.....}}...,||}}}}),,))...,......,))))}}..}|,,,|,..)|,,|||},.}}}...)