Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0018800

Sequence Length

410 nt

GC Content

0.4073

GCAACAGCUGAACAGAUGCGUCUCGCUCAAGUGAUCUUUGAUAAGAAUGAUUCAGAUUUUGAAGCUAAAGUUAAGCAGCUUAUGGAAGUGACAGGGAAAAAUCAGGAUGAAUGCAUAGUGGCCCUACAUGAUUGUAAUGGAGAUGUGAACAAAGCUAUCAAUAUAUUGCUGGAAGGGAAUUCAGACACAAGGUGAAGAAAAUGGAAUUGAUUGCAAUCAAGUGGACAAACCUUCAGAUCGUGGCAAGCGAGCCCGGGGUAGAGGACCAGGUUUCUGUAAAGUAAGUUUCAAACUUACUAUUGUCAAAGAUAGAAAGAUGGCAACGAAGAGUGUUGGCACGUACACCUCUGCUAAUUUAUUAGGUCCUAAACCCUGAAGUACACACCUUGGGAAGAAAAAGAAAAUAGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-78.80 kcal/mol

Ensemble Metrics

Free Energy: -88.02

Frequency: 0.0000

Diversity: 121.12

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((........(((((((......((.(.((((.(((((..((.....(((((((....)))))))...)).))))).))))).)).(((.....(((..(((....)))..))))))((((....))))...)))))))......))))..........(((((((......))))).))(((((((........((..(((.((((.......((((......)))).......)))).))).))((((((..((((((...(((((((..((((((((...))))))))..........)))))))..(((((..((.(.((((........))))))))))))........))))))..)))))).......))))))).....................

Thermodynamic Ensemble Prediction

(,....|{(......,{(((({((,{{{..((,(,((((.(((((..{{.,{,,{((((({,.,,|}}}}}}.,.)}.)))}).))))).}},{{{.....{{{..{{|..,,)))..))))}||((,{{{{|||{{{.||}}|||.......,||.||,......{{(((((......))))).},{{{{{||,.......|,..||,}||||}}}}}.}|||.....,{|||,..,,,.{{{...,,,}))((((((..((((((...,{{{{{{..((((((((...)))))))).,|,.|...,))}}}}|,.(((({..{.,(,((((........)))))))))))}.,,,....))))))..)))))).......}}}}}}}.................,,,)