Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0019400

Sequence Length

421 nt

GC Content

0.4181

GCAACAGCUGAACAGAUGCGUCUCGCUCAAGUGAUCUUUGAUAAGAAUGAUUCAGAUUUUGAAGCUAAAGUUAAGCAGCUUAUGGAAGUGACAGGGAAAAAUCAGGAUGAAUGCAUAGUGGCCCUACAUGAUUGUAAUGGAGAUGUGAACAAAGCUAUCAAUAUAUUGCUGGAAGGGAAUUCAGACACAACUUCAUGGGAGACUGUAGGGUGUAAGAAAAAGAAUUUUGCAAAAGAAAAUUCAGAAAACAAAGAGAAUAGAGAGAAGAAAAGCGAGAAAGAAUCGAGUCGUGGACGUGGAAACAACAACCGGAAAGGAAGAGGCGGCAAUCGUGGCAGAGAAUUUAGAGGUGAAGAAAAUGGAAUUGAUUGCAAUCAAGUGGACAAACCUUCAGAUCGUGGCAAGCGAGCCCGGGGUAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-72.50 kcal/mol

Ensemble Metrics

Free Energy: -82.32

Frequency: 0.0000

Diversity: 113.16

Structure Visualization

Structure Prediction

MFE Structure Prediction

(...((..(((...(((...(((((((...((.(.((((.(((((..((.....(((((((....)))))))...)).))))).))))).))..........((..(((....)))..))((((((((...((.((.(((((.((((.....(((............))).(((.....)))...)))).))))))).))...))))))))..........(((((((.......)))))))............................)))))))....)))..(((...)))((....)).....((.....))........(((((((...((.....((((....)))).....))....)))))))..)))..))......)(((....(((.(((......))))))....)))

Thermodynamic Ensemble Prediction

({....||({,...(({.,.(((((((,..,{..(((((,,,,,,.,({,{((,{{((((,,.,({.,,|||...}},}}},},,},}),}}.........}|{..|||,.,.)))..,,((((((((...((.{.((((((.((((.....,,{...........,)||{((......))),,.)))).)))))),.})...))))))))..........(((((((.......)))))))...............,,,,,,.......)))))))....}))..,||.|{{..{({....}.,}..||.....,,.....{,.(({{(((,.,({.....((({....|}}}.....}}...,||}}}}).,))..,,......,)|||.,..|({.{{{...,..)))))}..,.)})