Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBAP2_0023500

Sequence Length

368 nt

GC Content

0.4891

AUGGCACUCCUGUAUGGAGAAAGUCUCAUUUUGUUAUUUCACCUAGAUUAUUUUCUUUCUUUUUUUUUUUUUUUGAGACAGUCUUGCUCUGUUUCCCUGGAGUGGAGUGGUGCGAUCUCAGCUCACUGCAACCUCUGCCUCCUGGGUUCAAGCGAUUCUUCUGCCUCAGCCUCCCGAGUAGCUGGGACUACAGGCGCGUGCCACCAUGCCUGGCUAAUUUUUUGUAUUUUUGGUAGAGACAGGGUUUCACUGUAUUAGCCAGGAUGGUCACCAUCUCCUGACCUCGUGAUCCGCCUGCCUCGGCCUCCCAAAGUGCUGGGAUUACAGGCGUGAGCCACUGCACCCAGCCGAUUAUUUUCAUAAAUGGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-105.60 kcal/mol

Ensemble Metrics

Free Energy: -112.67

Frequency: 0.0000

Diversity: 122.81

Structure Visualization

Structure Prediction

MFE Structure Prediction

((....((((.....))))...))(((((((.............(((......)))..................(((((((.......))))))).((((.(((.((((((((((((((((((.((((((.....))).....(((((...((((....)).))...)))))....)))))))))))...((((.(.(((..(((((.((((((((((....((...(((((.......)))))...))....))))))))))))))))))...).))))...))))..((((((((.((((((((.....)).))))))....)))))).)))))))).)))))))..((......))..)))))))

Thermodynamic Ensemble Prediction

{{(((,({((,,,,.}|||,..||((((,,,.{...........{{{......})).................||||||((..{{(({.||...(((.((((,(.((.((((((......,.....}))|,)).)),)}))).)))..}})))}}.....},},||||||,|(,,,,}..}})))),.,,||||.,.|||}}|((((.((((((((((....{{...{{{{(,...,,,|}}})...}},.,.))))))))))}}|||||}...,.,,))},,..|||.{{((((((.({(((({{.....}).))))))....)))))).)}}}))),.,.))))),.{{......}}..,,,))))