Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBE3A_0011300

Sequence Length

413 nt

GC Content

0.4116

GGUAAAUACCUUAAAUUGGAAUUACUGGGUCACAUGAGGGGAGGUAUGGUGUCAAGAAAACAUAGUCACCAUUAUUACGAAAAGUAAAAUAUGGAAGAGAUGAUCCCUACCAUCAAUCAGCUUACAACUAGAGGCACUGACAAAUGUAUACAGAUAGCUGUAAUGUUAAAAAUCUGUAAGAGCCUGAUUUUAGAAUUCACCAGCUCCUCAGAAGUUUGGCGAAAUAUGAGUUAUUAAGCCUACGCUCAGAUCAAGGUAGCAGCUAGACUGGUGUGACAACCUGUUUUUAAUCAGUGACUCAAAGCUGUGAUCACCCUGAUGUCACCGAAUGGCCACAGCUUGUAAAAGAGAGUUACAGUGGAGGUAAAAGGAGUGGCUUGCAGGAUGGAGAAGCUGCACCAGUGUUAUUGGAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-90.60 kcal/mol

Ensemble Metrics

Free Energy: -101.11

Frequency: 0.0000

Diversity: 114.60

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((....)))((.............(.(((.((((.((((..(((((((((.(...........).))))))..((((.....))))...((((.((.((...)).)).))))....((((((.......(((.((((((..(((((.(((((....)))))))))).....((((...((((.(((.........)))...))))..)))).....(((..((((.....))))..)))(((((.(((.((.((.......)).))))))))))...............)))))).))).))))))..))).)))).)))).))).)..((((((..(((..........................)))..))))))(((((..........)))))(((((...)))))))

Thermodynamic Ensemble Prediction

(((....)))((..,..,,...{{{(((((.((((.((((,,({{((((((.(...........}.))))}|..((((.....))))...|||{.{{.{,,,.}},)).))}|{,..((((((.......(((.((((((..,,,{,.(((((.{{{||||,.||{{{{{..((((.,.((((.(((.........)))...)))).,))))..}}}|||..,{{{,.,,,}}}}..|||{{{||}||,.,,.,|}}.},,)))}||}}|||}},.,.,,,,}},.....)))))).))).))))))}}})}.)))).)))).)))....((((((..(((,,,,.......}}}},......,,..,})..))))))(((((..,....,..))))}|))))},,,,}.,))