Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_UBE3A_0012100

Sequence Length

407 nt

GC Content

0.3956

AUUUUCAUAGAUGACAGUUGAGAACUACUCUCAGAUGAGAUUCUUCCAUUGCUGGGUAAAUACCUUAAAUUGGAAUUACUGGGUCACAUGAGGGGAGGUAUGGUGUCAAGAAAACAUAGUCACCAUUAUUACGAAAAGUAAAAUAUGGAAGAGAUGAUCCCUACCAUCAAUCAGCUUACAACUAGAGGCACUGACAAAUGUAUACAGAUAGCUGUAAUGUAAGGUUAAAAAUCUGUAAGAGCCUGAUUUUAGAAUUCACCAGCUCCUCAGAAGUUUGGCGAAAUAUGAGUUAUUAAGCCUACGCUCAGAUCAAGGUAGCAGCUAGACUGGUGUGACAACCUGUUUUUAAUCAGUGACUCAAAGCUGUGAUCACCCUGAUGUCACCGAAUGGCCACAGCUUGUAAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-89.10 kcal/mol

Ensemble Metrics

Free Energy: -98.49

Frequency: 0.0000

Diversity: 135.96

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.((((((...(((.(((........))).))).)))))).)((((((.....((((....)))).....)))).....((((((((.((((((.((((((((((.(...........).))))))..((((.....))))...((((.((.((...)).)).))))......((((........))))..((((.......(((((....))))).......))))....((((...((((.(((.........)))...))))..)))).....(((..((((.....))))..)))(((((.(((.((.((.......)).))))))))))...)))).))))))....))))))))((((((((((((...))))((((.....)))))))))))).....))

Thermodynamic Ensemble Prediction

(.((((((...{{{.{{(,,,,,...}}),))),)))))).)((({((..,,,((((....,||}.....})),,....({((({(({({((((,{(((({((((.(...........}.}}||||..((((.....))))...||||.,{.({,,.,,.}}.})))|...{{((((.......{{|,|{{(({,...,||.(((((.,,,||}}},|,,..,{{{{,,..((((.,.((((.(((.........}))...)))).,))))..}}}|||..{{({.....)))}..}}}{{{|{,{{{.{{.{{}|.,.,})),}}))}})))}.,,}))},}},,,..))))))})))}|||||||||||,},}},))}|.}}}...,})))}))))}},...}))