Sequence Details

BLAST PRIMER
Symbol
hsa_VIM_0006200
Sequence Length
715 nt
GC Content
0.4028
AAUGAGUCCCUGGAACGCCAGAUGCGUGAAAUGGAAGAGAACUUUGCCGUUGAAGCUGCUAACUACCAAGACACUAUUGGCCGCCUGCAGGAUGAGAUUCAGAAUAUGAAGGAGGAAAUGGCUCGUCACCUUCGUGAAUACCAAGACCUGCUCAAUGUUAAGAUGGCCCUUGACAUUGAGAUUGCCACCUACAGGAAGCUGCUGGAAGGCGAGGAGAGCAGGAUUUCUCUGCCUCUUCCAAACUUUUCCUCCCUGAACCUGAGGGAAACUAAUCUGGAUUCACUCCCUCUGGUUGAUACCCACUCAAAAAGGACACUUCUGAUUAAGACGGUUGAAACUAGAGAUGGACAGGUUAUCAACGAAACUUCUCAGCAUCACGAUGACCUUGAAUAAAAAUUGCACACACUCAGUGCAGCAAUAUAUUACCAGCAAGAAUAAAAAAGAAAUCCAUAUCUUAAAGAAACAGCUUUCAAGUGCCUUUCUGCAGUUUUUCAGGAGCGCAAGAUAGAUUUGGAAUAGGAAUAAGCUCUAGUUCUUAACAACCGACACUCCUACAAGAUUUAGAAAAAAGUUUACAACAUAAUCUAGUUUACAGAAAAAUCUUGUGCUAGAAUACUUUUUAAAAGGUAUUUUGAAUACCAUUAAAACUGCUUUUUUUUUUCCAGCAAGUAUCCAACCAACUUGGUUCUGCUUCAAUAAAUCUUUGGAAAAACUC

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-170.50 kcal/mol
Ensemble Metrics
Free Energy: -183.98
Frequency: 0.0000
Diversity: 228.76
Structure Visualization
Structure Prediction
MFE Structure Prediction
...((((..((((....))))..((....(((((.(((....))).)))))...)).((.....((((((......((((..((.(((.(((.((((((((.....))))(((((((((((....((((....))))...))).......((((((((((((......))))))))))))...(((.((..(((....)))..))..)))((((((.(((((.....)))))))))))......)))))))).(.((((.((((((.................)))))).)))).)...........(((((.((((..(((..(((.(.(((......(((.(((((.((((((((...((..((....))..))..))))))))...........(((((.......)))))((............))................))))).)))......))).))))))))))))))))..((((((((...((((((((((((...((((((((.(((.((((((((((.((((..................)))).))))).....)))))........))).)))).))))...))))))))))((((((((((....)))))))))).....))...))))))))....)))).))).))).))..))))....))))))...))(((((.......)))))...))))
Thermodynamic Ensemble Prediction
...((((,,{{((.,,,|}}}..||}|...,{((,{({,...}},.}}||(({{((.{,.....,(((({......||||..{{.{(({((,{(,{(((((,,,..||||{((({{,,,{{,,,.|||{.,,,}))),,.}))...,,,,((((((((((((......))))))))))))..,(((.{({.{{(,,,,|||,,||,,|||((((((.(((((.....}))))))))))......|}}}}|||,{.,,,,.||||||........,||{||,..||||||{||||...{{{..,{...,,(((,,,,|}}}.....||..}||,..}}}}|||}.,|||,((((((((...{{..{{....,}..}}..)))))))).,........{(((((.......))))}}|............,.............,,..}))}..}}},..{{,|,,.|})})}}}},))))))}.||||||||..,||{(((((((((,..{(((({{{{((({{{{{{{{{{|,({{{..................}})}.}}))}....,||},.........}}||||,,.||||...})))))))))|(((((((({....}})))))))}.....))...))))))))...,)))}})))})}}.}),.)}||,,..,})))),.,))))}}},...,}.}}}},...})))
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