Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_VIM_0006400

Sequence Length

494 nt

GC Content

0.3603

GAUUUCUCUGCCUCUUCCAAACUUUUCCUCCCUGAACCUGAGGGAAACUAAUCUGGAUUCACUCCCUCUGGUUGAUACCCACUCAAAAAGGACACUUCUGAUUAAGACGGUUGAAACUAGAGAUGGACAGGUUAUCAACGAAACUUCUCAGCAUCACGAUGACCUUGAAUAAAAAUUGCACACACUCAGUGCAGCAAUAUAUUACCAGCAAGAAUAAAAAAGAAAUCCAUAUCUUAAAGAAACAGCUUUCAAGUGCCUUUCUGCAGUUUUUCAGGAGCGCAAGAUAGAUUUGGAAUAGGAAUAAGCUCUAGUUCUUAACAACCGACACUCCUACAAGAUUUAGAAAAAAGUUUACAACAUAAUCUAGUUUACAGAAAAAUCUUGUGCUAGAAUACUUUUUAAAAGGUAUUUUGAAUACCAUUAAAACUGCUUUUUUUUUUCCAGCAAGUAUCCAACCAACUUGGUUCUGCUUCAAUAAAUCUUUGGAAAAACUC

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-91.10 kcal/mol

Ensemble Metrics

Free Energy: -101.64

Frequency: 0.0000

Diversity: 116.61

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((........((((.........(((((.......)))))........)))).....(((((((((((...(((..((.((..((((...))))..)).))..)))...))))))))..))).((((((((...((..((....))..))..))))))))...........(((((.......)))))((............))...........)))))))..........(((((..((........)).)))))((((((((...((((((((((((...((((((((.(((.((((((((((.((((..................)))).))))).....)))))........))).)))).))))...))))))))))((((((((((....)))))))))).....))...)))))))).....(((((((((.(((((...(((((...))))).)))))..........)))))))))...

Thermodynamic Ensemble Prediction

((,{{{{,,,....,((((,,.,{,,,,(({{{......,)))))........||||.....{({((((((((...(((..{(.,,..((({...})))..,..}}..)))...))))))))..))}.((((((((...{{..{{....}}..}}..)))))))).,.,,.....{(((((.......))))}},..,.........}}..}|......,|||}}}}..........(((((..((......,,)).)))))((((((((...((((((((((((.,.{(((({,({(((,(,,,,{{{{|,||||..................,}}|.|}}}}.....}}}},......,.))),)}}}.}}}}...))))))))))((((((((({....}))))))))).....))...)))))))).....|{{{{{{{{.(((((...(((({...))))).)))))..........})))))}},...