Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_VIM_0006700

Sequence Length

364 nt

GC Content

0.3297

GUUAUCAACGAAACUUCUCAGCAUCACGAUGACCUUGAAUAAAAAUUGCACACACUCAGUGCAGCAAUAUAUUACCAGCAAGAAUAAAAAAGAAAUCCAUAUCUUAAAGAAACAGCUUUCAAGUGCCUUUCUGCAGUUUUUCAGGAGCGCAAGAUAGAUUUGGAAUAGGAAUAAGCUCUAGUUCUUAACAACCGACACUCCUACAAGAUUUAGAAAAAAGUUUACAACAUAAUCUAGUUUACAGAAAAAUCUUGUGCUAGAAUACUUUUUAAAAGGUAUUUUGAAUACCAUUAAAACUGCUUUUUUUUUUCCAGCAAGUAUCCAACCAACUUGGUUCUGCUUCAAUAAAUCUUUGGAAAAACUC

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-58.70 kcal/mol

Ensemble Metrics

Free Energy: -65.92

Frequency: 0.0000

Diversity: 76.35

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((...)))((......((((..(((...)))..))))........(((((.......)))))((............))..........((((........))))..(((((..((........)).)))))((((((((...((((((((((((...((((((((.(((.((((((((((.((((..................)))).))))).....)))))........))).)))).))))...))))))))))((((((((((....)))))))))).....))...)))))))).....(((((((((.(((((...(((((...))))).)))))..........))))))))).))

Thermodynamic Ensemble Prediction

(((...}))((......{{{{..{{..,,))).,|||}......,(((({(,,.....)))}})},,,...,,.....},,}.......((((........))))..(((((..((......,,)}.)))))((((((((...((((((((((((.,.{(((({,({(((,(,,,,{{{{|,||||..................,}||.|}}}}.....}}}},...,..,.))),))}}.,}},...))))))))))((((((((((....)))))))))).....))...)))))))).....{((((((((.(((((...(((({...))))).)))))..........})))))))}.))