Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_XPO1_0019400

Sequence Length

411 nt

GC Content

0.3577

UACUAUGGACUACAAAUUUUGGAAAAUGUGAUAAAAACAAGGUGGAAGAUUCUUCCAAGGAACCAGUGCGAAGGAAUAAAAAAAUACGUUGUUGGCCUCAUUAUCAAGACGUCAUCUGACCCAACUUGUGUAGAGAAAGAAAAGGUGUAUAUCGGAAAAUUAAAUAUGAUCCUUGUUCAGAUACUGAAACAAGAAUGGCCCAAACAUUGGCCAACUUUUAUCAGUGAUAUUGUUGGAGCAAGUAGGACCAGCGAAAGUCUCUGUCAAAAUAAUAUGGUGAUUCUUAAACUCUUGAGUGAAGAAGUAUUUGAUUUCUCUAGUGGACAGAUAACCCAAGUCAAAUCUAAGCAUUUAAAAGACAGCAUGUGCAAUGAAUUCUCACAGAUAUUUCAACUGUGUCAGUUUGUAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-73.80 kcal/mol

Ensemble Metrics

Free Energy: -82.51

Frequency: 0.0000

Diversity: 138.44

Structure Visualization

Structure Prediction

MFE Structure Prediction

...(((((((((((....((((((..(((((...........((((((...)))))).....((........))............((((((((((.((........)).))))(((((....((((...............)))).....)))))...............(((((((((...))).))))))..(((((........)))))..((((..(((.(((.(((((((..(.....)..)))))))..))).)))..))))..(((((.((..((((......(((((((....((.((((((((.......(((.........)))))))))))))...))))))))))))).))))))))))).....)))))....))))))...))).))))))))...

Thermodynamic Ensemble Prediction

{{{,(((,,(({{(....(((({...{((({....,{{{{.{(({{{{..,||||||.,,..,{,.,|{|,,}},.........}}),)}})}|||,||.,..,,,.||.{{{,{{,|}}||,,||,.,,|||{{,{,,,,,,{{{,{{{{{,,,,...,...,}}}}.,,|((((((((...)))}}})))}..(((((........)))))..{{{{..(((.(((.(((((((..(.....)..)))))))..))).)))..}}}}..,,,||.|,.|||||..,{{.{{{|||,,,,,||,|||||||||,}}},||||.,,,,,..,,,,,)))},})))..,})))},,.,},,,.))}))){{{{{{{{{..{{|{{.....,,,,}))))..)))))))..}}