Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_XPO1_0019900

Sequence Length

342 nt

GC Content

0.3567

GAAUAAAAAAAUACGUUGUUGGCCUCAUUAUCAAGACGUCAUCUGACCCAACUUGUGUAGAGAAAGAAAAGGUGUAUAUCGGAAAAUUAAAUAUGAUCCUUGUUCAGAUACUGAAACAAGAAUGGCCCAAACAUUGGCCAACUUUUAUCAGUGAUAUUGUUGGAGCAAGUAGGACCAGCGAAAGUCUCUGUCAAAAUAAUAUGGUGAUUCUUAAACUCUUGAGUGAAGAAGUAUUUGAUUUCUCUAGUGGACAGAUAACCCAAGUCAAAUCUAAGCAUUUAAAAGACAGGCAACAUGUGCAAUGAAUUCUCACAGAUAUUUCAACUGUGUCAGUUUGUAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-58.50 kcal/mol

Ensemble Metrics

Free Energy: -66.44

Frequency: 0.0000

Diversity: 108.10

Structure Visualization

Structure Prediction

MFE Structure Prediction

...........(((((.((((.(((.......((((.((((((.........(((..((((((..(((((((..(((((...........)))))..)))).)))...((((((...(((..(((((........))))).)))...))))))...(((((((..(.....)..)))))))...)))))).)))........))))))))))...((.(((((((....((.((((((((.......(((.........)))))))))))))...))))))).))..))))))))))))(((((((((..(((((.........)))))..)))))))..))

Thermodynamic Ensemble Prediction

,,,,.......((((,{((({{(((......,{{(,.((({{{,|,}....||||..{{(({{,,{,,,{({,,({({{.,,,...,,..}}}}}.,}||{((((((...}))|,})}}}..(((((........)))))..|{{{..(((.(((.(((((((..(.....)..)))))))..))).)))..))},......}}},,}||||...{{.{{{|||{,,,,||,||||{{|||,,,,.||||.,,,,,..,,,,}}))}}}}}}...}}}}}},.,},.}))))))))))),.,{{{|||,,(((((.,.......}})))..}))))))..,)