Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ZEB1_0003200

Sequence Length

235 nt

GC Content

0.4383

CUGUUUAAGGAAGACAGAGCAGGCAUUGGAUAAUAUUCUUAUUAAGCUCAGGACAGUCAGCUUACCCUGAGGCGCAUUGACCACUGGGAGAGAUGUGGAUAUAGAAAUCCAAUCAUGGAUCAUUAGGAAGAAGGAAGCGUUGGAUAGGCUCUCAGCAUGGUCCACCACAGUUGCAUUAAGGAUUGUGUAUUACGUUUUUUACUUAUGUGAAACACCACCUUCCCCCAUCAAGCCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-51.50 kcal/mol

Ensemble Metrics

Free Energy: -56.69

Frequency: 0.0002

Diversity: 65.46

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((.....))))))(...(((.(((..(((((....)))))..((((((.............)))))).((((((..((....))...)))))).........(((((....))))).....((..(((((......(((((..(((...)))...))))).(((((((........)))))))......((.((((((....)))))).))..)))))..))..)))))))

Thermodynamic Ensemble Prediction

((((((.....))))))(...(((.{(((.{,(((,,,.||||,..((((((..,{,..,||...}}}))),|{{{{|,.|{..,|)}...))))|)|,,,,....{((({....})))}.....(({{(,{((,{({({(((((..(((...)))...))))).(((((((........)))))))....}}||}|{((((....)))))}..),.}))))}.)),,}}}))))