Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ZEB1_0003500

Sequence Length

229 nt

GC Content

0.3057

AAAAAUCUUACAGCUUUCCUAAGCCAUCUUUUUAGGUCAAUUCCAGAAUUUGUUUAUGAUCAAAUUGACAAGUACCUAGCCAAAGAGAUUAAGAUACUGAAUCAGAGAAAGAAGUCUAAAGAGAUAAUUUUCCAAUGAUCAUUUCUAAAGAAGGAAUAGAGAUAAAAUAUUUUAAAACAGCAGCUGUUUAAGGAAGACAGAGCAGGCAUUGGAUAAUAUUCUUAUUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-32.20 kcal/mol

Ensemble Metrics

Free Energy: -37.78

Frequency: 0.0001

Diversity: 54.32

Structure Visualization

Structure Prediction

MFE Structure Prediction

(....)((((..((((....))))..(((((((((((..........(((((((.((......)).)))))))))))))..)))))((((.((...)).))))(((........)))...((((..(((.(((((((.((((((((.....)))))).((((((...))))))......((..((((((.....)))))).)).))))))))).)))..))))..))))

Thermodynamic Ensemble Prediction

(....}((({..((((....)))).,(((((((((((.........{(((((,,.,,...}}}))},,,,})})))))}..}))))|||,.,{,..||..}}),|{,.......)}|.,.((((..(({.(((((((.{{((((((.....})))}).|||||,...,,,}}}......((..((((((.....)))))).)).},))))))).}))..))))..))))