Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ZEB1_0004100

Sequence Length

339 nt

GC Content

0.4366

UCUCAUUAGUCACCAGCACCACCAACCUGUCAUAUUGGCAAUACAUAGUUUUGGUCACCAGGAGAAGGAGUCACAGAAAACCAGUACUACUACUUACAGAAGAUUAACUGAAAGCACAUGUCCUGAUUUGUUCUUGAAGAUAAGACUGAGCUCAGGACAGUCAGCUUACCCUGAGGCGCAUUGACCACUGGGAGAGAUGUGGAUAUAGAAAUCCAAUCAUGGAUCAUUAGGAAGAAGGAAGCGUUGGAUAGGCUCUCAGCAUGGUCCACCACAGUUGCAUUAAGGAUUGUGUAUUACGUUUUUUACUUAUGUGAAACACCACCUUCCCCCAUCAAGCCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-75.50 kcal/mol

Ensemble Metrics

Free Energy: -81.73

Frequency: 0.0000

Diversity: 70.78

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((....((.(((((.((........(((((...))))).......)).))))).))...))))(((..(((((.....(((((.......(((.(((........))).)))....((((((((((((.(((((....))))).)))).))))))))((((((((......))))....)))).)))))......)))))........(((((....))))).....((..(((((......(((((..(((...)))...))))).(((((((........)))))))......((.((((((....)))))).))..)))))..))......)))

Thermodynamic Ensemble Prediction

((((.,,.((.(((((.((........(((({...})))).......)).))))).)).,.))))(((.,{{,{{.....,((((.....,.{{,.(((........))).|||{...((((((((((((.(((({....})))).,))).))))))))||,,||}}.,,|.,.|||....}},),,}}))|...{,||||{........{((({....})))}.....((,,(,{((,{({({(((((..(((...)))...))))).(((((((........)))))))....,}||,|{((((....))))}}..),.})))),,)),,,...)))