Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ZEB1_0013200

Sequence Length

250 nt

GC Content

0.3120

UUUAAAUUCUCAACUGGCAAUUGGCCGAAAACUCCCAUCUGAAGACAUGAUCAUCCAAAUGUCAUUUUGUGAUUUGGCUACUGUCUGCUUGACAUAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUUGCCAGAUAACAUAAUCACAACAGUAAUAUUCCAUCAUAUUCUCAGGUCCUACUUAUACUCAAGGGAAGGGGAUGAUAGAAGACCAUGGAUCAUUGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-34.40 kcal/mol

Ensemble Metrics

Free Energy: -38.76

Frequency: 0.0008

Diversity: 30.01

Structure Visualization

Structure Prediction

MFE Structure Prediction

........(((..(((((((.((((((((...((.((...((.(((((..........))))).)).)).)))))))))).((((.....))))........................................................)))))))..................((((..(((((....((((...(((((.(((...........))))))))...))))....)))))..)))))))

Thermodynamic Ensemble Prediction

{.......{,,..(((((({.((((((((...((.((...((,(((((..........))))).)),}).)))))))))).((((.....))))........................................................}))))))..............,{..({({..(((((....((((...(((((.(((...,....},,})))))))...))))....)))))..))))}})