Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ZEB1_0014100

Sequence Length

396 nt

GC Content

0.4268

GAAAGCACUAUCAAGAAAGACUAAUGGAGUGACUAUCAAAAGGAAGUCAAUGGACAACCUUAAACUUCCACCACAAGAGGAAUAUAAAGAGGUCCCUCCUGCACCAAGAAAGAUCUGCAGAUCUUUUUCAGUGUUCUUGGAGGUGUGGGGUGUGAGAACUUGAUCAGUUUGUGUCAGCCACCUUGUUCUCUAAAGUUACAAAUUAUAAUACUGUGGUAGAAACAAAUUCAGAUUCAGAUGAUGAAGACAAACUGCAUAUUGUGGAAGAAGAAAGUGUUACAGAUGCAGCUGACUGUGAAGGUGUACCAGAGGAUGACCUGCCAACAGACCAGACAGUGUUACCAGGGAGGAGCAGUGAAAGAGAAGGGAAUGCUAAGAACUGCUGGGAGGAUGACA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-90.20 kcal/mol

Ensemble Metrics

Free Energy: -97.41

Frequency: 0.0000

Diversity: 122.82

Structure Visualization

Structure Prediction

MFE Structure Prediction

....(((((.((((((.........((((.((((.((....((((((....((....))....)))))).((......))........)))))).)))).((((..(((((((((....)))))))))..)))))))))).)))))....(((.(...(((...((((((.....(((..(((..((((((...................((.((((....(((..((((.(.((((..............((((((.((((((.(........).)))))))))))))))).).))))..))))))).))......(((....)))......((.((((.((.....)))))).))..)))))))))...)))..))))))....)))..).)))

Thermodynamic Ensemble Prediction

.{,.{{(((,(((((,.........{{{{{((((.((....||{|||}...,{.,..}|{{,.||||||,((.,,,{,|}........,||}},.}))),((((..(((((((((....)))))))))..)))))))))}.))))}}}}}|{|,|,..|||}}},|||}}.({{((.({.(((,.{{((({...,,.,,........,,.((,((((,...,{{..((((.{.((((....,,........((((((.((((({.{........}.)))))))))))))))).|.)))}.,}}}}||}.}),.,..|||,,,.|}}}..,...||.||||.{{.,}.,))||||{|,..,}||,},,,...,))....))))))})),)}.)})))