Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ZEB1_0016200

Sequence Length

344 nt

GC Content

0.4360

GACAACCUUAAACUUCCACCACAAGAGGAAUAUAAAGAGGUCCCUCCUGCACCAAGAAAGAUCUGCAGAUCUUUUUCAGUGUUCUUGGAGGUGUGGGGUGUGAGAACUUGAUCAGUUUGUGUCAGCCACCUUGUUCUCUAAAGUUACAAAUUAUAAUACUGUGGUAGAAACAAAUUCAGAUUCAGAUGAUGAAGACAAACUGCAUAUUGUGGAAGAAGAAAGUGUUACAGAUGCAGCUGACUGUGAAGGUGUACCAGAGGAUGACCUGCCAACAGACCAGACAGUGUUACCAGGGAGGAGCAGUGAAAGAGAAGGGAAUGCUAAGAACUGCUGGGAGGAUGACA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-76.10 kcal/mol

Ensemble Metrics

Free Energy: -84.12

Frequency: 0.0000

Diversity: 117.45

Structure Visualization

Structure Prediction

MFE Structure Prediction

.......(((..((((((((......))............(((((.(((((............))))).(((((((((.((((((((((((..(((((((((((((((.....)))))...)))..))))))).))))))..................((.((((....(((..((((.(.((((..............((((((.((((((.(........).)))))))))))))))).).))))..))))))).)).....((((..((((..........))))..))))..)))))).))))))))))))))..((........))))))))..)))..

Thermodynamic Ensemble Prediction

.{{,,{((({.{(((((({{.,,,{{||.,.......,,|}.|||}||((((..(((((((((....)))))))))..)))}|||||||||},,|||||,||||,{{{.....}}}}}.{{|||.{|.|||,,,|||||...,..,.......,,,,.((,((((,...,{{..{(((.{.((({....,,........((((((.((((({.{........}.)))))))))))))))).|,}}}},,|}}}||}.}),.,.,|||,,,,|||},,,...,,,)))),,|,}).}))||||{|,..,,||,,,......}}....})))))))),)).))}}}