Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ZEB1_0017500

Sequence Length

426 nt

GC Content

0.4484

UUACAAAUUAUAAUACUGUGGUAGAAACAAAUUCAGAUUCAGAUGAUGAAGACAAACUGCAUAUUGUGGAAGAAGAAAGUGUUACAGAUGCAGCUGACUGUGAAGGUGUACCAGAGGAUGACCUGCCAACAGACCAGACAGUGUUACCAGGGAGGAGCAGUGAAAGAGAAGGGAAUGCUAAGAACUGCUGGGAGGAUGACACAGGAAAGGAAGGGCAAGAAAUCCUGGGGCCUGAAGCUCAGGCAGAUGAAGCAGGAUGUACAGUAAAAGAUGAUGAAUGCGAGUCAGAUGCAGAAAAUGAGCAAAACCAUGAUCCUAAUGUUGAAGAGUUUCUACAACAACAAGACACUGCUGUCAUUUUUCCUGAGGCACCUGAAGAGGACCAGAGGCAGGGCACACCAGAAGCCAGUGGUCAUGAUGAAAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-93.90 kcal/mol

Ensemble Metrics

Free Energy: -103.19

Frequency: 0.0000

Diversity: 102.17

Structure Visualization

Structure Prediction

MFE Structure Prediction

((....((((((....))))))...))((..((((..((((.....))))......((((((.((((((.(........).))))))))))))....((.(..((((((.((..(((((..(.((((......((...(.((((((((.......((((((.....((.........))....))))))....)).)))))).)....))...)))).)..))))).))((((((...))))))........(((((((.((((((...(((.(((..(((...(((...........))))))....))).)))....(((((.(((...))).))))).........))))))))....)))))..))))))..).))(((((..(((..((....))....)))..)))))....))))..))

Thermodynamic Ensemble Prediction

({.,..{{{{({...,|}||||...,}((..((((..,(((.....}}},......((((((.((((({.{........}.)))))))))))),}},((.(,.(((({|.|{,.,||.,..{{(,{{.,|,,,{|...,.|}))),.{.}}.,},((((((.....{,.........))....))))))((((((((((({(((....,,...,{|.....{||||{..((((((...))))))........||}}}}.....,,....(((.(((..{{{..,|||..,,,......},,))}....))).})),,..(((((.(((...))).)))))........))),)))))))))))),,..}}})))..}.}}(((((..(((.,({....))....)))..)))))....}}},..))