Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ZEB1_0021100

Sequence Length

471 nt

GC Content

0.4013

UAAAAGAUGAUGAAUGCGAGUCAGAUGCAGAAAAUGAGCAAAACCAUGAUCCUAAUGUUGAAGAGUUUCUACAACAACAAGACACUGCUGUCAUUUUUCCUGAGGCACCUGAAGAGGACCAGAGGCAGGGCACACCAGAAGCCAGUGGUCAUGAUGAAAAUGGAACACCAGAUGCAUUUUCACAAUUACUCACCUGUCCAUAUUGUGAUAGAGGCUAUAAACGCUUUACCUCUCUGAAAGAACACAUUAAAUAUCGUCAUGAAAAGAAUGAAGAUAACUUUAGUUGCUCCCUGUGCAGUUACACCUUUGCAUACAGAACCCAACUUGAACGUCACAUGACAUCACAUAAAUCAGGAAGAGAUCAAAGACAUGUGACGCAGUCUGGGUGUAAUCGUAAAUUCAAAUGCACUGAGUGUGGAAAAGCUUUCAAAUACAAACAUCACCUAAAAGAGCACUUAAGAAUUCACAGUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-93.80 kcal/mol

Ensemble Metrics

Free Energy: -104.16

Frequency: 0.0000

Diversity: 148.97

Structure Visualization

Structure Prediction

MFE Structure Prediction

(...((.(((((........((((.(((((((.((((.....(((.(((((....(((((.(((...))).)))))....((((....))))..(((((((((((..(((....))).))(((((.(((((........((((.(((((.((..((((((((.(........).))))))))..)).)).)))(((((((...)).))))).))))......))))).)))))..................((((.((((.......)))).)))).....(((((.((..(((((((........)))))))..))...)))))(((..(((....))).)))......)))))))))))))).((((.(((...))))))).)))....))))...)))...))))))))((((.((((...))))..))))...))))).))......)((((...........))))

Thermodynamic Ensemble Prediction

(...,(.({(((..{((,,.{{({.{{{,{{..{{(,||,....|,|,.||....(((((.(({...})).))))}....||{{,{{{,|||{{((((({{(((({{.(({{{{,,(((((..(((.{({....))....)))..))))).{{.((((((((.{.,....,.).))))))))}},,..,.,..,{{{{,....})}))}||(((,.......,}}},.))))}.,...,,...........((((.((((.......)))).)))).,}}}||{||}|{..(((((((........))))))),,),...||||,,{,.,(((,,,,|}}.||.......}}}}}}})),......,.,,}))))))))))|}}}|}||,.},}}....,}...))|||||}||||||{{...|}}}),........}}}}}.,,....,.)|{{|...........))))