Sequence Details

BLAST PRIMER
Symbol
hsa_ZKSCAN1_0002400
Sequence Length
293 nt
GC Content
0.4471
GAAUAGUAAAGAAACACAUCAUAAAACCUCCCAGGACAUAAAGUGUGAUUCCAAUACACUGCUUUGUGUAAUUCCACGAACUUGCACCUGGACUGUCCUUGUGAUGAGGAUUCCCAGCUUCCAAACUUAAUGGUGAUUUUCUAUGAAGAGCUCUGGGUCCUGGAUGUGUAGUAAGAACGAGGAAGUUCAAGAGGCAUCAGCCAGAUAAGACAAGGUGACACUGUUGGCAGACAUUUCCAUUUGUCUCUGCUGGAUCUUAACCCCUCAGGACAGUGCUGCAAAGAAGCCCUCAC

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-62.80 kcal/mol
Ensemble Metrics
Free Energy: -69.06
Frequency: 0.0000
Diversity: 90.05
Structure Visualization
Structure Prediction
MFE Structure Prediction
....(((.........((((((((.((...(((((((((((((((((.........))).))))))))).................)))))...))..)))))))).(((.........)))..))).....((((.(((((.((...(((.((..(((((((((((.(.....((((......))))...).)))))..((((...(((((((.((....((((....))))....)))))))))...))))............)))))))).))).)).)))))...))))
Thermodynamic Ensemble Prediction
.,..{((...,,..,.((({{{{{.,{...(((((,{{{{{((((((.,.....||))).}}}}})))).....,,,,,...,},.))))),..||,,|}}}}}}),(({,.,,,,|,,}},..,||...|,({{{.{{(({.{{.,,|{{,{{|,|{{(({(((((.(.....((((......))))...}.)))))..((((...((((((({{(,...((((....))))...,),)))))))..,))))............)))))))),})).)}.}}}))...))))
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