Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ZZZ3_0002900

Sequence Length

351 nt

GC Content

0.4245

AAAAAGCUGGAACAGCUACUCAUCAAAUACCCUCCUGAAGAAGUAGAAUCUCGACGCUGGCAGAAGAUAGCAGAUGAAUUGGGCAACAGGACAGCAAAACAGGUUGCCAGCCGAGUACAGAAGUAUUUCAUAAAGCUAACUAAAGCUGGCAUUCCAGUACCAGGCAGAACACCAAACUUAUAUAUAUACUCCAAAAAGUCUUCAACAAGCAGACGACAGCACCCUCUUAAUAAGCAUCUCUUUAAGCCUUCCACUUUCAUGACUUCACAUGAACCGCCAGUGUAUAUGGAUGAAGAUGAUGACCGAUCUUGUUUUCAUAGCCACAUGAACACUGCUGUUGAAGAUGCAUCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-65.10 kcal/mol

Ensemble Metrics

Free Energy: -71.82

Frequency: 0.0000

Diversity: 90.78

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((((((...((((((.(((..........))).).))))).........((((((...((.((((..(((((...((((((..(.........)..))))))......((((....)))))))))...)))).))...)))))).)))))))....((.......))........................((((((((((.((((.............(((((..((...))..))))).........((((((......))))))....(((((..((((((..(((((........)))))...))))))..))).))....))))))))))))))......

Thermodynamic Ensemble Prediction

.....(((((({...((((((.(((..........))).),,))))....,,...(((({(...,{.||||..|{{|..,.((((((.,{.........}..)))))).|||||((((....)))}))},,..,|||,.,,..,)))))).}))))))....({.......,,........................((((((((({,((((......,......{{{{(..{(,,,||,,|||}},....,,,,((((((......)))))).....||||..{,{||{||||||{||}|....,})}}}}}}}}}}...},,})).},.))))))))))))))......