Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr11_0169900

Sequence Length

360 nt

GC Content

0.4278

GUAAUUCUAAAGUCCGGGUAUUUUCUGCUUGCUUAACUUUCUCAGGCUGAAUCCUUCGAUCAAUUCCAAAAGGAAAAGUCCAAGGAAAAGCUAAGGAAGAGUCAACUGGUUGGUUUCUAUUUUCUGAGUAGGAAGCUGAAGAAUUCAAUACCUGGGGUGAGCUUGUUUGUGUGCCACACUUUACAGGACUUUCAGGAGACAUAACAAUGUAGCUUUUGCGCUUUCUCCGGGAUUCUCGGCAGACAGGAAUGGUUCUUUCUACCACACUGCACUCUGAGGACACGGGAGAAAUGCUCCCAUCUCGAGAAGUAAAAUUGCAGUUAGAAUUAUUUUCUUGUCCAGCAUCUAGACCCUUUUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-89.50 kcal/mol

Ensemble Metrics

Free Energy: -97.64

Frequency: 0.0000

Diversity: 123.30

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((((((.((((((((((((((....((((..((((((..((((...(((((.(((...((((....))))..))).)))))..)))).))))))....((((....))))(((((((...)))))))))))...))))...)))))))))).)((((((((..((((...))))...))))).)))((..(((((((....)))).((....))(((((((((.(..(((((((.((.(((...((((.......))))..)))..)))))))))..).))))))).))......)))..)).(((....)))..))))))))))((....(((.((...)).))).......))

Thermodynamic Ensemble Prediction

(,,,,|(({{(,,,{((((,,,,{(({,,,(((...((((((..((((...(((((.(((...((((....))))..))).)))))..)))).,)))))}}|,{,,...,,}}|{(((((({...)))))))))||{{,||||{..,,,,||||||{.((((((((..((((...})))...))))}.},,.{{{({{((((....}))).,|}},,),|}||,||||}|}}|||||||}.({((({{{{(((,....,,|,,,.{|||{{{{|||||||...(((((.....))))).)))}})),.},.....})))})})))))})},|}}}}|}}.|}}}..},)))}}.,,,.))