Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr11_0430200

Sequence Length

271 nt

GC Content

0.5203

AGAUAGAGUCUCACUAUGUUGCUCAGGCUGGUCUCAAACUCCUGGGCUCAAGCGAUCCUCCCACCUCAACCUCCCGGAGUGCUGGGAUUAUGGUCUCACUCUAUCACCCAGGCUGGAGUGCAGUGGCAUGAUCACAACUCACUGAAGCCUUGACCUCCUGAGCUCAAGCCAUCCUGCCACCUCAUCCUCCACGUAGCUGUGUUACUGGAAAGGGGUCCUGAUCCAGACUCCAAAAGAGCGUUCUUGGACCUUACAUAAGAAAGAAUUUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-66.30 kcal/mol

Ensemble Metrics

Free Energy: -73.08

Frequency: 0.0000

Diversity: 101.09

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((...))))(........(((((((..((((..........(((((...((.((..(((((((((.........))).).)))))..)).))..(((((((((.....)).)))))))((((((..((....))..)))))).))))).)))).)))))))....((......))..........((((.(((((...)))))))))..(((((((.((....(.(((.....))))..))..)))))))......((((...)))).)

Thermodynamic Ensemble Prediction

{(((,,,||}}{.,{,((..(((((((..(((,....,},}}}||||,,.,{.{{,,.{,{{{{{{{....,,,,||}}.,,))))).,|||}}..,||||||}|....,||,|}|||||.{((({,,.{||,.,...}},})}.,}}}|,}}}}.}}})))},}},||..,,.,)},,,..,....((((.(((((...)))))))))..(((((({.{...,.|}|||}....}}},,,||,,})}}}},......{{|,...,})).)