Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr13_0350000

Sequence Length

270 nt

GC Content

0.3296

GAAUUAAAAUCAUAUAAAGCAUGUUCCUUGGCCACAAAAAAAUCAGAAGCCAACAGCAGAAAGAUGGAAAAUCCCCCAAAUAUGUGAAAACUCAACAACACAUUUCUAAACAAUAUCUGGGUCAAAGAGGAAGUCACAAAGGAAAUUAGAGUAUAUUUAAAACAGAAUAAAAAAAUGAAGCACAACCAAGCAAAAUUUGUGGACUGCAGAUAGAGCAAUGCUUAGAGGGGAAAAUGUAGCAUAAAAAUGCUUAUAUUAGGAAGAAAAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-31.60 kcal/mol

Ensemble Metrics

Free Energy: -37.08

Frequency: 0.0001

Diversity: 43.47

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((..................))))((((((................)))...........(((.....)))((((....(((((............)))))..........((((((((((...........((((((.............(((((......)))))..........((........))....)))))))))).))))))((((...))))...))))..((((((((((....)))).))))))..........)))

Thermodynamic Ensemble Prediction

((((..................))))((((((..,..........,..)))}....,.....,.}}.....{{((({....{((((............))))}..........((((((((((..........,|,{,,......,,,,,...,,|||,.....,,,,,..........{(,,,.....}}....,))))))))).))))))((((...)))).,.))))}.((((((((((....))))},)))))..........,))