Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr15_0043500

Sequence Length

868 nt

GC Content

0.3111

GUGCAUAUUGUAAAUCCUAGAAGUAUCACUGGGGGGAAAAAAAACAGAGGGACAAGCUAAUAAUGGAGACAAUACAAAAUUCCAAAAAUGCUCCAUUAACCGAAAAGAAGGCAGAAAAGGAAGAAAAGAUUAGACAAAUAGAAAACAAAUAGUGUCUUAAACACAAUUAUAUUGCCAACUGCAAUAAAUGUAAAUGGACUUAAUCAAAAAGCAACGAUCGUAAAAAGUCAAUCUGAAAGCAAGAUGCAACUAUAUGCUAUCUAAAAGAAAGACAUUAAAUGACCAAUAAGCUGAAAAUAAAAACACAGCAAAAUGAUAUAAUGUGCAAAAAUUAAUCAUAAGAAAGGAAUGGAUACACUAAUAUCAAAGUAGACUUUAGAUAAGGAACAUUACCAGCGAUAAACAGAGACAUUUCAUAAUGAUAAAGACAUCAAUUAAUCAAGGAGAUCUAACAGUCCUAAAUGUGAACACACCUAAGGACACAACUUUAAAGACUUUGCUUCAAAGCAUAUGAAGAAAAAAUGAACAGAGCAGAAGGAAGAUAAACUCAAAAUUAUAGUUGAAGAUUUCAACAUUCCUCUCUCGGUAAUUAGUAAGUGGACAGAAAAUCAGUAAGGAUACAGAAGAAAUACAUUUAUCUAUCUGACAAAGAACAUAUGUUCUGAAAAGAAUGUGAAAAUAUUUGAACAGACACACAAAAGAAAACUUCUCAACAGCAGUCAUGAAGAAAAUGUAAAUUAAGACCAUAAUGACUUUUUACACCCAUUAGAAUGGCAAUUAUUUUAAAUAAAAAACAGAAAUUACCAAGUGUUAGAAAAGAUGCAGAGAAAUUGGAACCCUUAUUCACUGCUGGUGGGAAUGUAAAAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-125.40 kcal/mol

Ensemble Metrics

Free Energy: -145.01

Frequency: 0.0000

Diversity: 219.35

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.((((.(((..(((((........)))))(((............((......))..((((((((.((.................)))))))))).((........))................((((((..................((((.....))))..........(((..((((.....))))..)))..))))))..............(((((((((((.(((.......(((((((......))).)))).......))).................((((............))))....((((....(((.((...((((((.((.(((.(((((((..........((((((((....)))).)))).((.......))...........(((....)))....((((......))))..........(((((((....(((((....(((....)))...)))))....((((...(.(((((.((((..................)))))))))).))))..........((((........)))))))))))..))))))).)))..)).))))))...)).)))....))))(((....)))........(((((((.(((.((((((..........(((((((....((((((....))))))...)))).)))....((((...))))........)))).))))))))))))..............))))))))))).))).))).)))))).))((((((.........(((....((((((...............((((.(((...((...))...))).))))))))))...)))))))))

Thermodynamic Ensemble Prediction

((((((.((((...{(((((........)))))}..........((((..(((.......((((((((.((.................)))))))))).((........))................,,{{{{,{,.............,.,|||}}...,,||..{,.((((((.....)))))}..}}}...,}}.,,,,,}}.....,,.......}}.....)))..))))...)))}.})))},)(((,{{((.(({...})).)).}}}..............((((............))))....((((.,..(((.((...((((((.((.(((.(((((((......,,..{{(({{{{....}})).)}}}.{{.......}|...........{{,....|}}....((((......,}},.}}.,,,...(((((((....(((((....(((....)))...))))).,,,((,{,....{((((((({,...{{{.|.........,}}....))))}}},|,,,,......}}....,,,.,}))),}))))))..))))))).)))..)).))))))...)).)))....)))},,..,,.|,|,{{,,,....,.||}.}}}.||||,{..,.......{({((({....((((((....))))))...)))).,,,.....,...,,{{({{,.{{{{(({,|.,{||...,|{{{{{..,,,.,.....,}.}}})))})}.{{{{{{,,||||...||}||||,,..............,,.||,.,||||......,,}||,,.,,,.,}||...,)}}.,),})))))).)))))),))...)))