Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr16_0017300

Sequence Length

226 nt

GC Content

0.4912

GAUAGCAGGCCCCACUCCAGACCUGCUCAAUGAGAAUUUAAUCUCUAACCUGAGCCCCGGGUGUUUCGUGGGUACAUUAAGGUUUGAGAAACUCUGCUCUAAGCCACCAGUUGUCAACCUUGACUGCACACUGGAAUUACCUGAGAGUCUGGGCCUCAGCUCCAGAGAUUCUGAUUUAAUUGGUCUGGAGGGCAGCCUGGACAUAACCAUUUUAAAAGCUCCCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-67.74 kcal/mol

Ensemble Metrics

Free Energy: -72.35

Frequency: 0.0006

Diversity: 63.60

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((((.((.(((((((((.....(((.(((.....((((((...(((((.((((((...(((.((((((......((((((((........))).))))).(((((.((((....)))).....)))))...)))))).))))))))).)))))....))))))))).))).....)))))))))))..)))))...........................

Thermodynamic Ensemble Prediction

(....(((((.((.(((((((((.....(((.(((,....,(((((...((((({((((((,,{((({{({(((..{{,,((((((({,,.,,..,||,.,)))}.{{|||}{|||,,,,))).})},}))}))}},)))))),}},}}}))).}))))....))))))))).))).....)))))))))))..))))|,......,,...........,,,...)