Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr16_0410800

Sequence Length

1349 nt

GC Content

0.6738

GAGGGAGGUGGGAGCUGGGAGGUGGGAGCUGGGAGGUGGGAGGUGGGAGCUGGGAGGUGGGAGCUGGGAGGAGGGAGGCGGGAGCUGGGAGGUGGGAACUGCGAGGAAAGAGGUGGGAACUGGAAGGUGGGAGGAGGGAGCUGGGAGGUGGGAGCUGGAAGGUGGGAGGUGGGAACUGCGAGGAAAGAGGUGGGAGCUGGCAGGUGGGAACUGGGAGGUGGGAACUGCGAGGAAGGAGGUGGGAACUGGAAGGUGGGAGGUGGGAGCUGGGAGGUGGAAACUGGAAGGAGGGAGGUGGGAGCUGGGAGCUGGAAGAUGGGAGCUGGGAGGUGGGAACUGUGAGGAAAGAAGUGGGAACUAGAAGGUGGGAGGAGGAAGCUGGGAGGUGGGAACUGGGAGGAGGGAAGAGGGAGCUGGGAGGUGGGAGCUGGGAGGUGGGAACUGAGAGGAGGGAGGCGGGGUUGGAAGGUGGGAACUUGGAGGAGGGAGGCGGGAGCUGGAAGGUGGGAGCUGGGAGGAGGGAGGCAGGAGGUGGCAGGGGAGGUGAGAGGAGGGAGGCGGGAGCUGGGAGCUGGGAACUGGGAGGAGGGAGGAGACAGGGGCUGUAAGGUGGGAGGCGGGAGCUGGGAGGUAGGAGGUGGGAGCUGGGAACUGGGAGGAGGGAGGCGGUAGCUGGGAGGUGGGAGGCGGGAGCUGGGAGGUGGGAGCUAGGCGGCGGGAGGAGGGAGGUGGGAGCUGGGAACUGGGAGGAGGGAGGCAGGAGCUGGGAGGUGGGAGGCGGGAGCUGGGAGGUGGGAACUGGGAGCUGGGAGGUGGGAAUUGGAAGGAGGGAGGAGGGAGGUGAGGUGGGAGGUGGGAGGAGGGAGUUGGGAGGUGGGAGCUGGGAGGUGGGAGGUGGGAACUGGGAGGAGGGAGGCGGGAGCUGGAAGGUGGGAGGCGGGAGCUGGAAGGUGGGAGGCGGGAGGUGGCAGGUGGGAGGUGAAAGGAGGGAGGUGGGAGGUGGGAGGAGGGAGCUGGGAGCUGGGAGGUGGGAACUAGGAUGAGGGAGGCGGGAGCUGGGAGGUGGGAGCUGGGAGGUGGGAACUGGGAGGAGGGAGGCAGAAGCUGGGAGGUGGCAGCUGGGAGCUGGGAGAUGGGAGGUAGGAACUGGGAGGAGGGAGGUGGGAGGUGGGAGGAGGGAGGUGGGAGCUGGGAGGUGGGAGGUGGGAGGAGGGAGGUGGGAGCCAGGAGCCGGGAGCUGCUAGGUGGGAGCUGGGAGCUGGAAGGUUGGAGCUGGGAGGUGGGAGCUGGGAGCUGGGAACUGGGAGGAGGGAGGUGGGAGCUGGGAGGUGGGAACUGGAAGGAGGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-184.70 kcal/mol

Ensemble Metrics

Free Energy: -212.27

Frequency: 0.0000

Diversity: 329.40

Structure Visualization

Structure Prediction

MFE Structure Prediction

......(((....(((....(((....(((...........(((...((((....(((....(((....((.....(((....(((....(((.....((.(.(.......(((....)))......).).))......)))....)))....)))...................((((.((..............)).)))).......((.(.((.......)).).))......(((....(((....(((...........(((....(((....(((...........(((....(((...((((..........))))....)))....)))...........)))....)))....)))...........)))....)))....))).................((((..........))))....(((....))).............(.(((((..........))))).)........(((....(((....)))....)))...........(.((.....)).)..........................((((...((((.....(((...............)))..(((....(.(....(((....(((...........(((...((((....(((...........(.((.(((((....(.(....(((....)))....).)...)))))..)).)...........)))...))))....)))...........)))....)))....).)....)))...((((....(((....)))...)))).................................................................(((....(((...........(((....)))...........)))....)))...........(((....)))............((........))..........................................))))...))))....(((....))).............(.((..((.(....).))..)).)..(((....(((...........(((...(((((........)))))....)))...........)))....)))................................(((....(((.........................)))....)))...((((...((((.((((.......)))).))))....))))....))....)))....)))...))))....)))...........)))....)))....)))....)))............

Thermodynamic Ensemble Prediction

......,,{...,(((....{,{...,{((......,....{,{...,{((....|,|...,|||...........|{|....|||....|,|.....||,|.,.......{{{....|||....,,|..........,|||....|||....}))......,....,.......|{{(.{{..............||.||||......{((.,..|}}.....)),).}}......{{{....{|{....|||....,.,...,{((....{{{....|{{...........|||....|||...{{({..........}}||....||}....})}.,.........|||....}||....},}...........,||....|||....}}}.................,{((....,,|...,}||....|||....,||.............{.{{{{{....,,,...,)))).,........,{(....|((....,,|....})}...........,.|{.....},,)........,...........{{{....}||....,||.....{{................|||..,((,|..,.,....{||....|||...........{{{...((((....(((...........{.({.(((((....,.{....(((....)))....,.}...))))}..)).)...........)))...))))....}||...........}}}....|||....,.|....,})...((((....({{....}))...))))............,,...........................................,,{{....,.{....{((......,....{{{....}))...........|||....|||....,.|....{{|....})}......,.....||......}.})...............................,..........,,||...,}||....,,|....,}}|,.........,{(.,..|((....,,|.,..,||.,..,,|....,||...........{{|...{((((........)))))....}))...........,,,....,||..................................,....,||......,......,...........,,|....})),..,{||...((((.((((.,...,.))}}.})))....}}}}..||||....|||...}}))...}})}....,||...........}||...,}||....}}}....}))............