Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr19_0140900

Sequence Length

488 nt

GC Content

0.3381

GAAAGAAAAUGAAAAAAGAUCCACAAAACCACUGUAGGUACUGUAGUUUUCUGAAUAAUACAGCAUAAAAUUUAUGGCAUAAACACAAGCAUAUACAGUUUUGAGUGCCAUAUUUACAUUAUACACAGUAAGUUCUGUCCAGUUCUCAUAUGGAGAAGUCACAGUAAGUUAGAAGGUACCUCUCCAAUUUUAACGUAUAUAUCAAUGAGCUGCAGAUUUUGUUAAAAUAUGGAUUCCAAUUCAAGAGAUCUGAGAUGAGACCUGAGUUACUGCAUUGCUAACAAACUCACCAAUGACAUAAAUGAUUCUAACUUAAGGAAAAUAGUUUGUAAAACAUCUAGUGAUAGAACCUGGGUUUUGUCCCCAUGUAUAUGACCAGUGAACAAAGAUGACAGCCUUCAUUUUCCAAAGCAAGAUAUAAACAAGAGAAACUAUUAAGAUAAGGGAUGUAAGAAAAAUGGAUGUGCUGUGGUCAAUAAUAAGCUGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-79.50 kcal/mol

Ensemble Metrics

Free Energy: -90.01

Frequency: 0.0000

Diversity: 154.00

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.................))(.....(((......))).(((((((((..(((...((((............(((((((...((.((((.......)))))).)))))))((((((..........)))))).((((..(.(((((.....))))).).))))...(((((((((.......))..)))))))))))...)))..))))))))).....((((..((((((....((..((....))..)).(((((((((((.(((.((..((((((((((((((..............((..((((......))))..)))))))))........)))))))))))).))))))))))).))))))...))))((((.......(((.((((((((((((((((....(..((((..............))))..).....)))........))))))).).))))).)))........)))).)

Thermodynamic Ensemble Prediction

...{{{{{{(......{{,{({({{..,,,..}}}.))}.||,{,||||}}|......{,({{{........((((((((...((.((((.......)))))).)))))))).,|,{....,..,,,|},,{{,((((,,{.(((((.....))))}.|.,|,,{{{{((({{{{{,...|||||{{{{{{{{({.,...,|{,..,...}},,},,..}))}))))}.|||}.,,,,.||{,.|.},,})}.||||||||||||{{|.||{{,{{{,,.,,,||||,..,..,,.......,..||||,,,,,,.})}....,}}}}}}....,..,|}}|}}))))}}.||||}}}},,,,}}}|}}.}}},,,{{||,......(((.((((((((((((((({...,{..,,{,..............},,,........},,,,,..,.}))))))).).))))).)))........)))).,