Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr1_0871000

Sequence Length

228 nt

GC Content

0.3728

GACUUCUUAUUUGGUUCUCUUUUAUUACACUAUGUUUAUUACACUAUCUCUUUUAUUACACUAUGUUGCCUCCAAAAGUUAACAUUUAUUGUACACAUAUCAUGAGCCAGCUCCUUGUGCUAAGCAUUUGCAGUGGAUCACUACUACUAUUCUGAAUCAGAUACUAGAGGAGUAGCAGUUUCUGGUGCCAGACUGCCUGAAUUUAAAUCCAGCUUUGCCACUUACCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-31.00 kcal/mol

Ensemble Metrics

Free Energy: -35.90

Frequency: 0.0004

Diversity: 77.13

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((........))))((.........(((((((((((.((((((..(((...(((((((..((((((.((.....)).))))))....))))...)))....)))..)).....)))).)))))))....))))((..(((.(((((.(((((..........))))).))))).))).)).((((.(((((((..(........)..))).)))).))))....))

Thermodynamic Ensemble Prediction

((((,{{,,,{((((((..........,,..{(((,{{.,|||,,..,,,...,,,((((..((((((.((.....}).))))))....))))...}}}....))),,)|,,,,,}}}|.}}}}}}}..},(((((....}}})},|,..,{{|,,,))))},..,))))))),|,||},}((({{{.|||||||,,{{.......,..))).},,},,....}}}))