Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr21_0073800

Sequence Length

517 nt

GC Content

0.2940

GUAUAUAUAAUCUUUAAAAUGGAAAUCUACAUACUAAUAUAUCUAUAAUUUAACAUUGUAAAUAAAAUAAUCUAUAUACUAAUAUAAACUAAUAUAUAUAUAUAAACUAUAUACUAAUAUAAUACAAACUAAUGGAUUACAUAGGCAAUCCAUUCAGUAAAACACUGUGCAGCCAUGAAGAACAAGGUAGGUCUCUAUAUACAGAUCCAAAACAAGCUCCAAGACUUAAAUGUAAAAAAAAAAGCAAGAUGUACAACAGUGUAUGUAGUAUGUUCCUACCCAUUUAAAGAAAAAGACAUAUACAUUACAUUAAACCAAAUAAAACUGCCUAUAUUCUGACUUACAAAAAUGGCAAUUUCAUCUGGUUCAACAUAAAUGCUUGUAUAGGCAUAAAAUAUUAUGGGAAUACACAAGGAUCUGAAGAGAUGAAUCAGAGGAUGGGUCAGAGCUGGCGAGUGUACCUUUUCCUACUCUGUUGCUUACCAUGUGCAUUUGUUACUGUUUUUUUAAAAAGGGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-81.90 kcal/mol

Ensemble Metrics

Free Energy: -94.19

Frequency: 0.0000

Diversity: 179.04

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.......((((((((.(((......((((((((...(((.((((((.....)))))).)))........((((((...(((((......))))).))))))...(((((....)))))......(((((((((((........)))))))).)))...(((((((((((((.((.....)).))).(((((........)))))........(((.....((......)).........)))....)))...)))))))...))))))))......)))))))))))......................(((((.((.(((.((((.....................)))).))).)).)))))....((((((((.(((((...(((((....)))))...)))))......(((((.........)))))((.((((((((((.(((.(((........)))))))))))..)))))))....)))))))))))(.(((((....))))).)

Thermodynamic Ensemble Prediction

((((((,...{,{{{,..((({......,|||,,{,.,,{{{.{{{{((.....}})))).}},........{(((({...{{{{{......}})}},}|||}}...|||||,...}}}}}......(((((((((((.,....,.)))))))).)))..,(((,,(((((,,({((,{{{{||.|||{(({{{.....,,{||}||{......,({{,...,{|||....||.........,||,...|||,,...|||||{{{||||||||{.....,,.,,,,,,},....}}}))))))},,}}}}}..,,,,.....,,.((((....,{,{{,...........)}}}.,||{.{{{||{{({.,.,..{{,(((((.({..(((({....}))))....)),)}}}).}|||,...}},))}))))))||}}}}||||}}|,|||,{{|}}}},.....)))))).))}}.))}..)}})))))).)))),|(.((({,...,))),}))