Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr21_0075600

Sequence Length

220 nt

GC Content

0.3545

AAAUGGAAUGUGACCAGAAUUCAUGGUUCUAUAUUUACCACUGUCUAAAAGUCACAAAACAAUAUCUAAUUUUUUCAUGGUUUCUAAUGCAGUUACAGUUUUGUUCUUAGGUCACAGUACAAGACUGCAUGCAUACUUUACACAAAUAUCAAACACAGAACGAUUGUAACACAGAUACCUCAGGGUUGUCUAAAGACACAGCUUCUCUUUUUGUGGUGGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-35.30 kcal/mol

Ensemble Metrics

Free Energy: -39.44

Frequency: 0.0012

Diversity: 55.83

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((.((((((.......((((((.........)))).)).......))))))........))))..)))(((((........(((((....(((((((((.((........)).)))))))))..)))))...................(((((((.((((((.....(((((((....)).)))))......))))....)).))))))))))))

Thermodynamic Ensemble Prediction

{(((({{,((((((.,.....{{||||,...,.,,.}|||,|}.......}}}}}}........,,....,,}||,,{,{|.....(((((....(((((((((.((........)).)))))))))..))))).....,,............{({((((.({{(((.....(((((((....))}}))))......))))..,.}}.)))))))))))}