Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr3_0649000

Sequence Length

247 nt

GC Content

0.4737

GGAGGGAAGGACAAGAGGAAAAAACCGGGAACUCUCAAGUCACUUAUCAGCAGGGGUAAAUACGAGCUCAAAUUAAGGCAUUUUUGUGGCUUGUCCUCUGGAAUGGCAUUCUACCCUCCCAGCCUGAGCACCCCAAACCUCAAAGCAUGAUGCUCUGACUGCCAAGUGAGUUCCUUGUUACCCUCAGCAUCUCUUUGAAAACCCUGUGAUAGAUGGAAUGUGAGAUCUCAGAAAUGGAAGGGAGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-56.30 kcal/mol

Ensemble Metrics

Free Energy: -60.67

Frequency: 0.0008

Diversity: 72.46

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((...((((...((......))((((((((...(((((..(((((((.(((((........(((((......(((......((((..((.((........))))..)))).......)))))))).......)))))...)).)))))...))))).......)))))))))))).)))))..(.(((((((.......(((.(((..............))).))).......))))))).)

Thermodynamic Ensemble Prediction

.(((((...((({,{.((......|}((((((((.,.({(((,,({{((((.(((((........(((({.....{({(......|||{,,||.{{.,.,,...||}}..}}})....,..)))))))),},,,..}}}}|..,||.}}})),,.))))),...,,,)))))))))))).)))))..|.(((((((.......(((.{((..,{,.........))).)))...,.,.))))),,..