Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr3_0650300

Sequence Length

646 nt

GC Content

0.3947

GUGAAUCUCCACACACAAAGACAACAGCAUAUCCUUAGUUCAGAGCAAAUAAAAAGAAUAUCAUUAAUCAUCCAGGAACACCAGUAAUCAAGAAACUUUCCCUGACCUUUCAGGUGAUAUAUAUCAUCAAUGGAAAUAUCGGCUAUCAGUUAUUCAAACUAUGCUAUAACAGACAUGCUGAAACCCUGCACAACUAAAAACUGCUACUGUUCACAUUCUGUUUUGAGGUGAGAAUUGUAUUUCAAUAACUACUGGAAAAAUGUGAAAUACACUCUACUAAACUGACAAAAUACAAAGACAGGCCAAACGAUCCUGUGAAAAUGUAGCAUUAUAGGAAUUAUUCUUAAUCUCUAAAAUAAACAGAAGAUAACUUCAUGUCAUAAGAAAUGUUAAGCAAGAUGGCAACAUGAUUUAAAGUCAAUGUCUAGGCUGGGUGCCAUGGCUCAUGCCUGUAAUCUCAGCACUUUGGGAAGCCGAGGCGGGAAGAUCACUUGAGGCAAGGAGUUCAAGACCAACCUCUCCAACACAGGGAAAGCCCAUCUCUACUAAAAAUACAAAAAUUUAGCUGGGUAUGGUGGAGCAUGCCUGUACUCCCAGCUACUCAGGAGGCUGAGACAUGAGAACUGCUUGAACCCGGUAGGCAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-131.00 kcal/mol

Ensemble Metrics

Free Energy: -146.71

Frequency: 0.0000

Diversity: 203.21

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((......)))..............((.((((....(((((.((((...........................((....)).............(((((((((...(((((((((((....))))))..)))))...((((((...((((.....))))(((((((((((((.(((.((((.....(((...........))).....)))))))))))).....((((((...(((((((((..................)))))))))))).)))...................(((((.........))))).....))))))))..((((.((((....)))).)))).........((((....)))).((((((.................))))))((((((((...)))).)))).((((((((((......))))).)))))...((((((....))))))))))))((.(((.......((((((........))))))......))).))....)))))))))....((((...................((((((((...((((.((.....)).))))))))))))(((((....)))))....))))..)))))))))..)))).))....

Thermodynamic Ensemble Prediction

(((..,,,.|.,.......,,,....((.,,,{,...(((({{{(({........{,.,,....,..,,.....((....}}.{,......,...{{(((((((...,{{{{((((((....,}}}}}..,})}....{{{(({,((,((({{.,.,,,,.||{{|||||{||.{{|}|||....,,||,...........|||{{{..||||||||||{{({{{.((((((,..(((((((((..................))))))))),)).,}}...||,.,,.........,{|||{.........}})))}}....)))))}},.{{{{|{{,{,,}}))}}.}}},......{{{((((....)))).})},.,......|}},,,}},.,})))),{(((((({...})))},))).,,,(((((({..,..(((....)))}}...,)})))).{{((((....)))))),})),,}})}})||}}||,..{{,(|||,{{......,||}|,....}}|||}}}},,,.|||,...................((((((((...((((.{{....,)).)))}))))))))(((((....)))))....))),..})))))))),,}},,.))...,