Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr5_0228200

Sequence Length

250 nt

GC Content

0.3160

AUCAAUAGGGGUCAGGGGAUAUCUUUCAUGAGGUUCCAGCACAAACACAACAAAAUGCAGCAGCCAAAUCACAAAAAAAAAAAGAAAAAAAAGUUGUGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUAAUGCUGACAACACUGUUUUCAGAAAUUUUAUUGAACUCAGUCCCUCUGACAUUGCUAUGGGCCACUUAGAGCAGUACCAGCUGUGUAGAUGUAGCUCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-35.80 kcal/mol

Ensemble Metrics

Free Energy: -39.62

Frequency: 0.0020

Diversity: 41.90

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((..((((((((..(((((....)))))..(((((...............((....))....((((((...................))))))......................................................))))).....((((..(((((........)))))..)))).))))))))....)))(((((.((.....(((((....)))))......)).)))))

Thermodynamic Ensemble Prediction

....,(((..(((((((({,.,,.{,,,,||((((.(.(((..............})}.,.}))}...{{{{{,..................,||||}|,.......................................................))||,}|},{{{,.{||||......,.}))))..}}))})),)))))..}.)))(((((.((,,...(((((....)))))...,,.)).)))))