Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr6_0278200

Sequence Length

350 nt

GC Content

0.4800

GAAUUCGGCUGGGCGUGGUGGCUCAUGCCUGUAAACCAAGCACUUCGGGAGGCCUAGCUGGGAGGACUGCUUGAGCCCAGGAGUUCAAGACCAGCCUGGGCAACAUAGUGAGACCUUGUCUCUAGAAACAACAGCAAGAACAAAAGGAUGCAAAUGCUGACACAUGCUAUAACAUGGAUGAACCCUGAGGAUAUCACGCUAAGUGAAAUAAGCCAGUCAUGAAAGGGCAAAUACUGUGUGAUUGCACUUACAUGAGGUACCUAGAGUAGUCAAAUUCAUAGAGAUAGAAAAUAGAGGGGUGGUUUCCAGGGGCUGCAGGGAGGGGAAAAGAAAGAGUUGGGGUUUAACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-89.60 kcal/mol

Ensemble Metrics

Free Energy: -95.89

Frequency: 0.0000

Diversity: 99.17

Structure Visualization

Structure Prediction

MFE Structure Prediction

...(((((((((((.(((((((....))).....))))....(((...))))))))))))))....(((.((((((((.....(((....((..(((((((........(((((...))))).........(((((....((......))....)))))...((((......))))......(((((.(((.(((((.((...........(((..(((((.(((.((((.(((...))).)))).))).))))))))..(((((((......)))).)))..............)).)))))))))))))))).))))..))......))).......)))))))))))

Thermodynamic Ensemble Prediction

...{{(((((((((.{,,,{||,,,.))),,...|||,..{,{{,...,,.||||||||||,.,,,(({,((({{(((||,,,|||....||..{{|||||..{...{.((((({.{,|((|{,.......(((((....({......})....)))))...((({......}))).,},..((((,.{{{.{((((.{,..}},,.....(((..(((((.(((.((((.(((...))).)))).))).))))))))..(((((((......)))).)))..........,,,,)).)}))))))),)}}))}.})))..)),.....}}}....}},}))))))))))