Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr7_0684200

Sequence Length

481 nt

GC Content

0.5447

GUCAAAGCUCGAGGACUCCUGAACUGGAUCCAGAGGCACCAUCCCCCUUGCGAGCAUCUCAGGUCCAUGAACUUGACCUGGGACCUGUUGUCCUGAUAAAUCAAGCUCCAAGUCUUCUAGAAGGGUCACGGCCUCCUCUCCACUAUCGGGGCGGUAUUCCUGCAGCCAGACCUGGAGCUCCUUGGGCAGGAUGGAAAGAAACUGCUCUAGCACCAGAAGCUCCAGGAUCUGUUCCUUGGUGUUUAUUUCUGGCCGCAGCCACUGAUGACAAAGUUCCUUCAGCCGACUGAGAGCCUCUCGGGGCCCAAAAGUGUUCUGGUAACAGAAGCGCCUGAAGCGUUGGCGGAAUAUCUCUGGGUCUGGAGGAGGCGUGUCCUGUAGGGUGGAAUCCUGCCCCCACAUGUGGUCUUCCUCAUCUUCCUCUUCCACCUUCACUAUUACGAUACCAUCCUUCUCCUGUGCAGCCUUUAUGUCCUGGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-154.50 kcal/mol

Ensemble Metrics

Free Energy: -164.41

Frequency: 0.0000

Diversity: 181.49

Structure Visualization

Structure Prediction

MFE Structure Prediction

.......(((.(((((.......(((((((((((((.....(((.((.(((.(((((((((((((.........)))))))))..))))(((((((........((((..((((..((.((((((((((((...((.((((......)))).)).....((((.((((((.((((.(((....((((((..(......)..)))))).))).))))((((.((((((.....))).))).))))...)))))).))))...))).))))......)))))))..))))..))))...)))))))......((((((((....))).))))).....)))..)).)))...)))))))))).((((((((.(((((..(((((((((((............(((.((....)).))).......))))))))).))......)))))...))))))))....))).......)))))..)))

Thermodynamic Ensemble Prediction

{{....,(((,(((({,{(,{,..{(({{{{{(((({....{(({{(,{(,((((,{((((((((,{......,))))))))),.}},,||||(({.....,,.||||||||((,.,,.{{{|||..,{.|||||,..,,,......)))||||,...,||||.{{(((({((((|(((.,,.((((((,,{,,....,..))}})),,)}.}}}){|||}|||||{,,,,.}))}})).}}},..,}}}|||.}}})},,{{||,||,...,.,}}}||||..},))},)}}){|{|||||||{({...((((((((.{{,|,,.,{|||.....))))}),})))})}),},)))))),((((((((.(((((..(((((((((((....{.......(((.((....)).))).......)))))))},.,},,,...)))))...)))))))).,.,||,.......)))))}))))