Basic Information

Symbol
CSRP2
RNA class
mRNA
Alias
Cysteine And Glycine Rich Protein 2 SmLIM CRP2 LMO5 Cysteine And Glycine-Rich Protein 2 Smooth Muscle Cell LIM Protein LIM Domain Only Protein 5 Cysteine-Rich Protein 2 LMO-5 Epididymis Secretory Sperm Binding Protein LIM Domain Only 5, Smooth Muscle SMLIM
Location (GRCh38)
12:76858703-76879638
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
-
External database
HGNC NCBI Ensembl OMIM UniProt GTEx

MANE select

Transcript ID
NM_001321.3
Sequence length
908.0 nt
GC content
0.4791

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-290.00 kcal/mol
Thermodynamic ensemble
Free energy: -306.72 kcal/mol
Frequency: 0.0000
Diversity: 172.12
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
(((.(((.((....)).)))))).(((((.(((((...(((((..((((((((((((.....)))..(((((((((((...........)))...)))))))).....)).)))))))..))))).)).(((((.((((.(((((.(((((((((((((..(((....)))..)).)))))).))))).))))).))))..((((((......(((((..(......(((......)))......)..))))).......)))))))))))...(((((.((((((.....(((((((((((((((((....)))))........))).)))))))))..(((((((((((((........)).)))))))))))...)))))).............((((((((.((((......)))).))))))))..(((((((((((((((..((..(((((......((.(((((...........((.(((....))))))))))))...(((.((((((...(....)...)))))).)))...)))))..))..)))..((.((((.(..((((((...((..(((((((((((((((((..((((...((((((..(...((((((....))))))...)..))))))..)))).....((((..(((((..............)))))....))))....(((((((..........(((((.((...((((....)))).)))))))........(((((..(((((((.............))))))).....)))))(((.....))))))))))....)))))))))))).)))))..))))))))..).)))).))))))))))))))................))))).))).))...)))
Thermodynamic Ensemble Prediction
{((((({,{{..,,)).||,.((((((.,{{((({.,{(,(((,.{.(((((((((((.........}})|(((((((...........))).))))))))))}....})})}})))),}).)))))).(({((.((((.(((((.(((((((((((((..(((....)))..)),}))))).))))).))))).))))..||{||,......{{{{{..(.,....{{{{....|}}}..,,..),,))))}...,,,,||}}|||,,||...,,,{{.((((((.....(((((((((((((((((....)))))........))),}))))))))..(((((((((((((........)},)))))))))))...)))))).......,,,...((((((((.((((......)))).))))))))..((((((((((((.,.{(({(((.{(({,.....(((.((((........)))))))|}},,,,}))},))}|,.....,.,,{((({.{({{......|||,.{(((|.,{|...,..,,)))))..||.,,,,.,..((((((...((..(((((((((((((((((..((((...((((((..(...((((((....))))))...)..))))))..)))).....((((..(((((..............)))))....)))).|..(((((((......{,,,(((((.{,...{{{,....,}},.}})))))........(((((.{(((((((.,...........))))))),....))))),|,.....}}})))))))....))))))))))))))))))..)))))))).})}),))}))))))))))))))................,}}}}})}..))}))),,

Transcripts

ID Sequence Length GC content
NM_001300965.2 NCBI
GGGAUCUCGGACUCCCUGGACCCUCCCUCCAGCCCAGCCUCGCUAGCUC… 883 nt 0.4745
NM_001321.3 NCBI
GGGAUCUCGGACUCCCUGGACCCUCCCUCCAGCCCAGCCUCGCUAGCUC… 908 nt 0.4791
NM_001413535.1 NCBI
AGCACAGGGACAUUCUAAUGAAUCCUUUAUUCCUUCAGAAUGCCUGUCU… 864 nt 0.4549
NM_001413537.1 NCBI
GGGAUCUCGGACUCCCUGGACCCUCCCUCCAGCCCAGCCUCGCUAGCUC… 1023 nt 0.4761
NM_001413538.1 NCBI
GGGAUCUCGGACUCCCUGGACCCUCCCUCCAGCCCAGCCUCGCUAGCUC… 1061 nt 0.4713
NM_001413539.1 NCBI
GGGAUCUCGGACUCCCUGGACCCUCCCUCCAGCCCAGCCUCGCUAGCUC… 1058 nt 0.4669
NM_001413540.1 NCBI
GGGAUCUCGGACUCCCUGGACCCUCCCUCCAGCCCAGCCUCGCUAGCUC… 890 nt 0.4831
NM_001413541.1 NCBI
GGGAUCUCGGACUCCCUGGACCCUCCCUCCAGCCCAGCCUCGCUAGCUC… 990 nt 0.4737
NM_001413542.1 NCBI
GGGAUCUCGGACUCCCUGGACCCUCCCUCCAGCCCAGCCUCGCUAGCUC… 795 nt 0.4629
Summary

CSRP2 is a member of the CSRP family of genes, encoding a group of LIM domain proteins, which may be involved in regulatory processes important for development and cellular differentiation. CRP2 contains two copies of the cysteine-rich amino acid sequence motif (LIM) with putative zinc-binding activity, and may be involved in regulating ordered cell growth. Other genes in the family include CSRP1 and CSRP3. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014]

Forensic Context

No relevant information is available at the moment.