Basic Information
Symbol
CIMAP1B
RNA class
mRNA
Alias
Ciliary Microtubule Associated Protein 1B
FAP123
ODF3B
Outer Dense Fiber Protein 3-Like Protein 3
Outer Dense Fiber Of Sperm Tails 3B
Outer Dense Fiber Protein 3B
ODF3L3
Orf2 5' To PD-ECGF/TP
Location (GRCh38)
22:50529710-50532520
Forensic tag(s)
Mechanical injury analysis
MANE select
Transcript ID
NM_001014440.4
Sequence length
872.0 nt
GC content
0.7007
Secondary Structure
Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-383.90 kcal/mol
Thermodynamic ensemble
Free energy:
-397.51 kcal/mol
Frequency:
0.0000
Diversity:
272.55
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
..((..(((((........((((((.(.((((((...(((((.........)))))...)))))).)))))))..(((((((..((.((((...(((((.((((((.....)))))).))....))).))))))))))))).......((.((((........))))...)).((((.((...(((.(.((.((((((((...............))))))))...))).)))))))))..((((((((((((.((((.(((.((((((((((((((.((......)).))).)))))))..((((....))))............((((((....(((((((.((.((((..(((.(((((((((((...)))....)))))))).))).))))..(((...((((((((((.((....((((......))))...))..))))))))).)...))).....)).))))...)))...)))))).....)))).))).))))..))).)))))))))...(((.........))).......))))).....(((((((...)))))))........((((.((((...((((((((...(((((.(((((((.....(((((((((....(((((((.........)))))))....)))))))))..))))))).....((((((((..........((((..(((((((((((((........)))))..((((..(((.....)))..))))((((.((((...)))).))))((....))..))))...))))..)))).((((.........))))..)).))))))))))).....)).))))))....)))).))))...)).
Thermodynamic Ensemble Prediction
..{({{((({{........((((((.(.((((((...(((((.........)))))...)))))).)))))))((((((((..{((.((((.....))))}}|.|}}}}}}))|,((,(((,,..{{.(((({{(((,{,........(({(((({{......,|||...||,{{((.((...(((,(,((,((((((((...,...........)))))))),..},,.,}))}))}},.({{({(((({{{.((((.{((,({{{{(((((((((.((,.....}),))),))))))}..((((....))))............((((((....{({{{{{.(({((((..(((.(((((((((((...))),...}))))))).))).))))..|||{{||{((((((((.{{....((((......))))...}}..)))))))))}}..,))),..,,)).)}))...))}.,,)})))),....)))),))}.)))),,))),||))|}|||,||(((...,,....||,....{{||||.......{((((((...)))))))},}},,,,,,,{,|||,,},,}|}|},||},|||||||||||||....,{((((((((....(((((((.........)))))))...,)))))))))}})))||||,,,,,((({{{{{.,,......,{{{{..(((((({{(((((........)))))..((((..(((.....)))..)))){{{{.{(((,.,|||}.}}))||,...))})))}}.,})))),.))),,||||,,....,.,}||}..})|)))}}}}|}},.....}}}}}}))),...))}})))})))})).
Transcripts
| ID | Sequence | Length | GC content |
|---|---|---|---|
| ACGCUAGGAGCUACCACAACAGGUGCUGCGAGCCGUAAGCGCCCCCCAC… | 872 nt | 0.7007 | |
| AAGAAUUUGCGGUGCAGGGGCCGCGGCCACCGCCUUCUGUCCGCAGGUG… | 825 nt | 0.6970 | |
| AAGAAUUUGCGGUGCAGGGGCCGCGGCCACCGCCUUCUGUCCGCAGGUG… | 920 nt | 0.7033 | |
| AAGAAUUUGCGGUGCAGGGGCCGCGGCCACCGCCUUCUGUCCGCAGGUG… | 692 nt | 0.6850 |
Summary
Predicted to be located in motile cilium. Predicted to be active in cytoskeleton. [provided by Alliance of Genome Resources, Jul 2025]
Forensic Context
A study in humans identified the CIMAP1B as a long noncoding RNA that is part of a top five positively correlated lncRNA/mRNA pair with nuclear factor-kappa-B inhibitor-alpha (NFKBIA), with a correlation coefficient >0.9999, and is associated with chemokine signaling, NF-κB signaling, apoptosis, and inflammation pathways in traumatic brain injury pathology [Zhang et al. DOI:10.097/WNR.0000000000001756].