Forensic RNA Knowledge Base

Sequence Details

Symbol

NM_004084.4

Sequence Length

498 nt

GC Content

0.5281

GGCUGCUCCUUGCUAUAGAAGACCUGGGACAGAGGACUGCUGUCUGCCCUCUCUGGUCACCCUGCCUAGCUAGAGGAUCUGUGACCCCAGCCAUGAGGACCCUCGCCAUCCUUGCUGCCAUUCUCCUGGUGGCCCUGCAGGCCCAGGCUGAGCCACUCCAGGCAAGAGCUGAUGAGGUUGCUGCAGCCCCGGAGCAGAUUGCAGCGGACAUCCCAGAAGUGGUUGUUUCCCUUGCAUGGGACGAAAGCUUGGCUCCAAAGCAUCCAGGCUCAAGGAAAAACAUGGCCUGCUAUUGCAGAAUACCAGCGUGCAUUGCAGGAGAACGUCGCUAUGGAACCUGCAUCUACCAGGGAAGACUCUGGGCAUUCUGCUGCUGAGCUUGCAGAAAAAGAAAAAUGAGCUCAAAAUUUGCUUUGAGAGCUACAGGGAAUUGCUAUUACUCCUGUACCUUCUGCUCAAUUUCCUUUCCUCAUCCCAAAUAAAUGCCUUGUUACAAGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-160.50 kcal/mol

Ensemble Metrics

Free Energy: -168.47

Frequency: 0.0000

Diversity: 198.73

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.((.....))...........(((((..(((((((((.((((((((.....((((((....(((......)))....))))))...(((((.((((.....((((....))..)).....)))).))))).(((((((((((((((..(((......)))...))))..)).)))..))))))....)).)))))).))))..((((..(((....))).))))((((......))))........(((((((((((((..(((((.((.(......).))))))).....((((.....(((.((((..((((((....(((....)))...))))))....((((((....)))))))))).)))))))(((((((................))))))).....))))))).)))))).((((((((((...(((....)))......))..)))))))).))))).))))).......)))...........

Thermodynamic Ensemble Prediction

(((,({{,,{,||,..,,.,{,..,(((,,{(({(,,.,,,,}}}|}}|}}}},((((((....(((......)))....)))))).|||||,{((((,...,.({,.....,(({((((......}))))))...|||))}||,|||||{{{..{{,..|||,.,,))},,|||||,.}||{||||}.,||{({(({,{({|{(((,..,{(((,,(({{{.{{{{({(({{{{{.}|,|{{..,{{{((({{,,,,||{,..|||||,{{.(......).})}}|||,....||||....,|||}||,|..||||||.},,||,,}}}.))}..})))),....((((((....))))))))),))))))}){|{||||}}},...,,,.,,..{|||||||,{...,}})))),|||,((((((({{{....,,}.,,)))))).}}}..))))}.}}},}},))))))))..........}}}...........